Bioliner is a command line application used to facilitate a 'pipeline' of bioinformatics jobs. Each pipeline has a list of modules to execute sequentially.
These instructions will get you a copy of the project up and running on your local machine for development and testing purposes.
Java 8+
Maven 3.5+
Ensure Java 8 is installed:
java -version
Ensure Maven is installed:
mvn -version
git clone https://github.com/omicsdatalab/bioliner.git
cd bioliner
mvn clean install
You can run tests for the system by:
mvn test
This project is licensed under the Apache License 2.0 - see the LICENSE.md file for details