Fix bug when resolving instance names (#13)

pipeline/translator.py

@@ -202,7 +202,7 @@ def _extract_template_variables(self):
         display_label_method_expression = _get_display_label_method_expression(class_name)
 
         # TODO: Specify base class. Implement template with configurable base class. Schema or ControlledTerm?
-        # Or; just remove this as its not needed when using separate templates.
+        # Or; just remove this as it's not needed when using separate templates.
         if self._schema_model_name == "controlledTerms":
             base_class = "openminds.abstract.ControlledTerm"
         else:

pipeline/utils.py

@@ -59,7 +59,7 @@ def get_instance_collection(self, version:str, schema_name:str) -> List[str]:
         # Make sure schema_name is correct casing (camel case) according to foldernames
         if schema_name == schema_name.upper():
             pass
-        elif schema_name == "UBERONParcellation":
+        elif schema_name in ["UBERONParcellation", "MRIPulseSequence"]:
             # Todo: Need to find a general solution for these exceptions.
             pass
         else:
@@ -87,7 +87,9 @@ def camel_case(text_string: str):
 
 def extract_filename_without_extension(path):
     base_name = os.path.basename(path)  # Get the base name from the path
-    return base_name.split('.')[0]
+    if '.' in base_name:
+        return base_name.rsplit('.', 1)[0]
+    return base_name
 
 def save_resource_files(version, schema_path_list):
     """