rename dev to tools

openMetadataInitiative · Oct 28, 2024 · ab574a0 · ab574a0
1 parent e0731f6
commit ab574a0
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Showing 28 changed files with 12 additions and 13 deletions.
diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml
@@ -34,7 +34,7 @@ jobs:
       - name: Run tests
         uses: matlab-actions/run-command@v2
         with:
-          command: addpath(genpath("dev")), testToolbox('ReportSubdirectory',"${{ matrix.MATLABVersion }}")     
+          command: addpath(genpath("tools")), testToolbox('ReportSubdirectory',"${{ matrix.MATLABVersion }}")     
 
       # Upload code coverage information to Codecov
       - name: Upload code coverage report to Codecov (https://app.codecov.io/gh/openMetadataInitiative/openMINDS_MATLAB)
@@ -80,7 +80,7 @@ jobs:
       - name: Generate tested with badge
         uses: matlab-actions/run-command@v2
         with:
-          command: addpath(genpath("dev")), createTestedWithBadgeforToolbox("${{  github.ref_name }}")     
+          command: addpath(genpath("tools")), createTestedWithBadgeforToolbox("${{  github.ref_name }}")     
 
       # Publish test results from all the releases
       - name: Publish Test Results
@@ -93,7 +93,7 @@ jobs:
       - name: Package Toolbox
         uses: matlab-actions/run-command@v2
         with:
-          command: addpath(genpath("dev")), packageToolbox("specific","${{  github.ref_name }}")     
+          command: addpath(genpath("tools")), packageToolbox("specific","${{  github.ref_name }}")     
 
       # Define the versionNumber using underscores, as this is used in the MLTBX
       - name: Set version number

diff --git a/.github/workflows/update.yml b/.github/workflows/update.yml
@@ -35,7 +35,7 @@ jobs:
         uses: matlab-actions/run-command@v2
         if: always()
         with:
-          command: addpath(genpath("dev")),codecheckToolbox()
+          command: addpath(genpath("tools")),codecheckToolbox()
 
       # Upload code issues report
       - name: Upload SARIF file
@@ -49,7 +49,7 @@ jobs:
         uses: matlab-actions/run-command@v2
         if: always()
         with:
-          command: addpath(genpath("dev")), testToolbox()
+          command: addpath(genpath("tools")), testToolbox()
 
       # Commit the JSON for the badge for the issues and tests
       - name: commit code issues badge JSON

diff --git a/dev/hooks/pre-commit b/dev/hooks/pre-commit
diff --git a/dev/+ommtools/codespellToolbox.m → tools/+ommtools/codespellToolbox.m b/dev/+ommtools/codespellToolbox.m → tools/+ommtools/codespellToolbox.m
@@ -7,5 +7,5 @@ function codespellToolbox()
     matbox.tasks.codespellToolbox(codeDirectory, ...
         "RequireCodespellPassing", true, ...
         "Skip", "./schemas/**", ...
-        "IgnoreFilePath", fullfile(projectRootDirectory, 'dev', '.codespell_ignore'))
+        "IgnoreFilePath", fullfile(projectRootDirectory, 'tools', '.codespell_ignore'))
 end
diff --git a/dev/+ommtools/installMatBox.m → tools/+ommtools/installMatBox.m b/dev/+ommtools/installMatBox.m → tools/+ommtools/installMatBox.m
diff --git a/dev/+ommtools/projectdir.m → tools/+ommtools/projectdir.m b/dev/+ommtools/projectdir.m → tools/+ommtools/projectdir.m
@@ -3,6 +3,6 @@
     % Assumes project root directory is 3 levels up from script location
     rootFolder = fileparts(fileparts(scriptFolder));
     L = dir(rootFolder);
-    assert(all(contains( {'code', 'dev'}, {L.name})), ...
+    assert(all(contains( {'code', 'tools'}, {L.name})), ...
         'Expected project root directory to contain "code" and "tools" folder.');
 end
diff --git a/dev/.codespell_ignore → tools/.codespell_ignore b/dev/.codespell_ignore → tools/.codespell_ignore
diff --git a/dev/MLToolboxInfo.json → tools/MLToolboxInfo.json b/dev/MLToolboxInfo.json → tools/MLToolboxInfo.json
diff --git a/dev/README.md → tools/README.md b/dev/README.md → tools/README.md
diff --git a/dev/common/mustBeValidVersionNumber.m → tools/common/mustBeValidVersionNumber.m b/dev/common/mustBeValidVersionNumber.m → tools/common/mustBeValidVersionNumber.m
diff --git a/tools/hooks/pre-commit b/tools/hooks/pre-commit
@@ -0,0 +1,4 @@
+#!/bin/bash
+# Run MATLAB script before committing
+
+matlab -batch "try; run('tools/hooks/pre_commit.m'); catch e; disp(getReport(e)); exit(1); end; exit(0);"
diff --git a/dev/hooks/pre_commit.m → tools/hooks/pre_commit.m b/dev/hooks/pre_commit.m → tools/hooks/pre_commit.m
diff --git a/dev/tasks/codecheckToolbox.m → tools/tasks/codecheckToolbox.m b/dev/tasks/codecheckToolbox.m → tools/tasks/codecheckToolbox.m
diff --git a/dev/tasks/createTestedWithBadgeforToolbox.m → ...s/tasks/createTestedWithBadgeforToolbox.m b/dev/tasks/createTestedWithBadgeforToolbox.m → ...s/tasks/createTestedWithBadgeforToolbox.m
diff --git a/dev/tasks/packageToolbox.m → tools/tasks/packageToolbox.m b/dev/tasks/packageToolbox.m → tools/tasks/packageToolbox.m
diff --git a/dev/tasks/testToolbox.m → tools/tasks/testToolbox.m b/dev/tasks/testToolbox.m → tools/tasks/testToolbox.m
@@ -12,7 +12,6 @@ function testToolbox(varargin)
     matbox.tasks.testToolbox(...
         projectRootDirectory, ...
         "CreateBadge", true, ...
-        "ToolsFolderName", 'dev', ...
         varargin{:} ...
         )
 end
diff --git a/dev/tests/oneOffs/organizationWithOneId.m → tools/tests/oneOffs/organizationWithOneId.m b/dev/tests/oneOffs/organizationWithOneId.m → tools/tests/oneOffs/organizationWithOneId.m
diff --git a/dev/tests/oneOffs/organizationWithTwoIds.m → tools/tests/oneOffs/organizationWithTwoIds.m b/dev/tests/oneOffs/organizationWithTwoIds.m → tools/tests/oneOffs/organizationWithTwoIds.m
diff --git a/dev/tests/oneOffs/personArray.m → tools/tests/oneOffs/personArray.m b/dev/tests/oneOffs/personArray.m → tools/tests/oneOffs/personArray.m
diff --git a/dev/tests/oneOffs/personWithOneAffiliation.m → .../tests/oneOffs/personWithOneAffiliation.m b/dev/tests/oneOffs/personWithOneAffiliation.m → .../tests/oneOffs/personWithOneAffiliation.m
diff --git a/...tests/oneOffs/personWithTwoAffiliations.m → ...tests/oneOffs/personWithTwoAffiliations.m b/...tests/oneOffs/personWithTwoAffiliations.m → ...tests/oneOffs/personWithTwoAffiliations.m
diff --git a/...s/propertyValueListWithNestedEmbeddings.m → ...s/propertyValueListWithNestedEmbeddings.m b/...s/propertyValueListWithNestedEmbeddings.m → ...s/propertyValueListWithNestedEmbeddings.m
diff --git a/dev/tests/testDocLinks.m → tools/tests/testDocLinks.m b/dev/tests/testDocLinks.m → tools/tests/testDocLinks.m
@@ -6,7 +6,7 @@
     addpath( fullfile(projectDirectory, 'code', 'internal') );
     openminds.startup()
 
-    testDirectoryPath = fullfile(projectDirectory, 'dev', 'tests');
+    testDirectoryPath = fullfile(projectDirectory, 'tools', 'tests');
     addpath(genpath( testDirectoryPath ));
 
     testCase = testReadTheDocLinks();

diff --git a/dev/tests/unitTests/ControlledInstanceTest.m → .../tests/unitTests/ControlledInstanceTest.m b/dev/tests/unitTests/ControlledInstanceTest.m → .../tests/unitTests/ControlledInstanceTest.m
diff --git a/dev/tests/unitTests/TutorialTest.m → tools/tests/unitTests/TutorialTest.m b/dev/tests/unitTests/TutorialTest.m → tools/tests/unitTests/TutorialTest.m
diff --git a/dev/tests/unitTests/testInstanceSaveLoad.m → tools/tests/unitTests/testInstanceSaveLoad.m b/dev/tests/unitTests/testInstanceSaveLoad.m → tools/tests/unitTests/testInstanceSaveLoad.m
diff --git a/dev/tests/unitTests/testLinkedCategory.m → tools/tests/unitTests/testLinkedCategory.m b/dev/tests/unitTests/testLinkedCategory.m → tools/tests/unitTests/testLinkedCategory.m
diff --git a/dev/tests/unitTests/testReadTheDocLinks.m → tools/tests/unitTests/testReadTheDocLinks.m b/dev/tests/unitTests/testReadTheDocLinks.m → tools/tests/unitTests/testReadTheDocLinks.m