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SANDS (v1.0)

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Ulrike Schlegel edited this page Nov 11, 2020 · 6 revisions

OVERVIEW

SANDS
anatomicalEntity.schema.tpl.json coordinatePoint.schema.tpl.json
anatomicalEntityRelation.schema.tpl.json coordinateSpace.schema.tpl.json
annotation.schema.tpl.json electrode.schema.tpl.json
atlasTerminology.schema.tpl.json electrodeArray.schema.tpl.json
brainAtlas.schema.tpl.json electrodeContact.schema.tpl.json
brainAtlasVersion.schema.tpl.json image.schema.tpl.json

https://openminds.ebrains.eu/sands/anatomicalEntity.schema.tpl.json

property expects count
nameOfLocation string (free text) 1 - 1
ontologyIdentifier string (pattern: IRI) 0 - 1
otherAnatomicalRelations object (type: https://openminds.ebrains.eu/sands/AnatomicalEntityRelation) 0 – n
parentStructure object (type: https://openminds.ebrains.eu/sands/AnatomicalEntity) 0 - 1

For more details have a look at the raw anatomicalEntity.schema.tpl.json.
Back to OVERVIEW.

https://openminds.ebrains.eu/sands/anatomicalEntityRelation.schema.tpl.json

property expects count
confidence object (type: https://openminds.ebrains.eu/controlledTerms/Confidence) 1 - 1
inRelationTo object (type: https://openminds.ebrains.eu/sands/AnatomicalEntity) 1 - 1
percentalOverlap object (type: https://openminds.ebrains.eu/core/QuantitativeValue|QuantitativeValueRange) 0 - 1
semanticRelation object (type: https://openminds.ebrains.eu/controlledTerms/SemanticRelation) 1 - 1

For more details have a look at the raw anatomicalEntityRelation.schema.tpl.json.
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https://openminds.ebrains.eu/sands/annotation.schema.tpl.json

property expects count
bestViewPoint object (type: https://openminds.ebrains.eu/sands/CoordinatePoint) 1 – 1
criteria object (type: https://openminds.ebrains.eu/core/ProtocolExecution) 0 - 1
criteriaQualityType object (type: https://openminds.ebrains.eu/controlledTerms/CriteriaQualityType) 1 - 1
displayColor array (3; integer (0-255)) 0 - 1
inspiredBy object (type: https://openminds.ebrains.eu/sands/Image) 0 - n
internalIdentifier string (free text) 1 – 1
laterality object (type: https://openminds.ebrains.eu/controlledTerms/Laterality) 1 - 2
namingTerm object (type: https://openminds.ebrains.eu/sands/AnatomicalEntity) 1 - n
relatedAtlasTerm object (type: https://openminds.ebrains.eu/sands/AnatomicalEntity) 0 - n
visualizedIn object (type: https://openminds.ebrains.eu/sands/Image) 1 - 1

For more details have a look at the raw annotation.schema.tpl.json.
Back to OVERVIEW.

https://openminds.ebrains.eu/sands/atlasTerminology.schema.tpl.json

property expects count
anatomicalEntities object (type: https://openminds.ebrains.eu/sands/AnatomicalEntity) 1 - n
definedIn object (type: https://openminds.ebrains.eu/core/FileInstance) 0 - n
fullName string (free text) 1 - 1
ontologyIdentifier string (pattern: IRI) 0 - 1
shortName string (free text) 1 - 1

For more details have a look at the raw atlasTerminology.schema.tpl.json.
Back to OVERVIEW.

https://openminds.ebrains.eu/sands/brainAtlas.schema.tpl.json

property expects count
description string (free text) 1 - 1
fullName string (free text) 1 - 1
hasVersions object (type: https://openminds.ebrains.eu/sands/BrainAtlasVersion) 1 - n
shortName string (free text) 1 - 1

For more details have a look at the raw brainAtlas.schema.tpl.json.
Back to OVERVIEW.

https://openminds.ebrains.eu/sands/brainAtlasVersion.schema.tpl.json

property expects count
alternativeVersionOf object (type: https://openminds.ebrains.eu/sands/BrainAtlasVersion) 0 - n
annotationSet object (type: https://openminds.ebrains.eu/sands/Annotation) 1 - n
coordinateSpace object (type: https://openminds.ebrains.eu/sands/CoordinateSpace) 1 - 1
fullName string (free text) 1 - 1
newVersionOf object (type: https://openminds.ebrains.eu/sands/BrainAtlasVersion) 0 - 1
ontologyIdentifier string (pattern: IRI) 0 - 1
releaseDate string (pattern: date) 1 - 1
shortName string (free text) 1 - 1
terminology object (type: https://openminds.ebrains.eu/sands/AtlasTerminology) 1 - 1
versionIdentifier string (free text) 1 - 1
versionInnovation string (free text) 1 - 1

For more details have a look at the raw brainAtlasVersion.schema.tpl.json.
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https://openminds.ebrains.eu/sands/coordinatePoint.schema.tpl.json

property expects count
coordinates object (type: https://openminds.ebrains.eu/core/QuantitativeValue) 2 – 3
coordinateSpace object (type: https://openminds.ebrains.eu/sands/CoordinateSpace) 1 - 1

For more details have a look at the raw coordinatePoint.schema.tpl.json.
Back to OVERVIEW.

https://openminds.ebrains.eu/sands/coordinateSpace.schema.tpl.json

property expects count
anatomicalAxesOrientation object (type: https://openminds.ebrains.eu/controlledTerms/AnatomicalAxesOrientation) 1 - 1
defaultImages object (type: https://openminds.ebrains.eu/sands/Image) 0 - n
fullName string (free text) 1 - 1
nativeUnit object (type: https://schema.ebrains.eu/controlledTerms/UnitOfMeasurement) 1 - 1
ontologyIdentifier string (pattern: IRI) 0 - 1
origin object (type: https://openminds.ebrains.eu/core/QuantitativeValue 2 – 3
releaseDate string (pattern: date) 1 - 1
shortName string (free text) 1 - 1
versionIdentifier string (free text) 1 - 1

For more details have a look at the raw coordinateSpace.schema.tpl.json.
Back to OVERVIEW.

https://openminds.ebrains.eu/sands/electrode.schema.tpl.json

property expects count
electrodeContacts object (type: https://openminds.ebrains.eu/sands/ElectrodeContact) 1 - n
internalIdentifier string (free text) 1 - 1

For more details have a look at the raw electrode.schema.tpl.json.
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https://openminds.ebrains.eu/sands/electrodeArray.schema.tpl.json

property expects count
electrodes object (type: https://openminds.ebrains.eu/sands/Electrode) 2 - n
internalIdentifier string (free text) 1 - 1

For more details have a look at the raw electrodeArray.schema.tpl.json.
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https://openminds.ebrains.eu/sands/electrodeContact.schema.tpl.json

property expects count
contactPoint object (type: https://openminds.ebrains.eu/sands/CoordinatePoint) 1 - 1
definedIn object (type: https://openminds.ebrains.eu/core/FileInstance) 0 - n
internalIdentifier string (free text) 1 - 1
relatedRecordings object (type: https://openminds.ebrains.eu/core/FileInstance) 0 - n
relatedStimulations object (type: https://openminds.ebrains.eu/core/FileInstance) 0 - n
visualizedIn object (type: https://openminds.ebrains.eu/sands/Image) 0 - n

For more details have a look at the raw electrodeContact.schema.tpl.json.
Back to OVERVIEW.

https://openminds.ebrains.eu/sands/image.schema.tpl.json

property expects count
coordinateSpace object (type: https://openminds.ebrains.eu/sands/CoordinateSpace) 1 - 1
definedIn object (type: https://openminds.ebrains.eu/core/FileInstance) 1 - 1
voxelSize object (type: https://openminds.ebrains.eu/core/QuantitativeValue) 2 - 3

For more details have a look at the raw image.schema.tpl.json.
Back to OVERVIEW.

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