Pre-process example notebooks #645
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| name: Pre-process example notebooks | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| pr_number: | |
| description: "Update the cache for PR#: (leave blank if not a PR)" | |
| required: false | |
| default: "" | |
| type: string | |
| schedule: | |
| - cron: 0 0 * * * # 1/day at midnight UTC | |
| push: | |
| branches: | |
| - main | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ inputs.pr_number || github.ref || github.run_id }} | |
| cancel-in-progress: true | |
| jobs: | |
| preprocess: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Choose deployment branch | |
| shell: bash -l {0} | |
| run: | | |
| if [[ ${{ github.event_name }} != "workflow_dispatch" ]]; then | |
| echo "DEPLOY_BRANCH=_cookbook_data_$GITHUB_REF_NAME" >> "$GITHUB_ENV" | |
| elif [[ "${{ inputs.pr_number }}" == "" ]]; then | |
| echo "DEPLOY_BRANCH=_cookbook_data_$GITHUB_REF_NAME" >> "$GITHUB_ENV" | |
| else | |
| echo "DEPLOY_BRANCH=_cookbook_data_PR${{ inputs.pr_number }}" >> "$GITHUB_ENV" | |
| fi | |
| - name: Report dispatch to PR | |
| if: github.event_name == 'workflow_dispatch' && inputs.pr_number != '' | |
| uses: thollander/actions-comment-pull-request@v2 | |
| with: | |
| pr_number: ${{ inputs.pr_number }} | |
| message: > | |
| A workflow has been dispatched to regenerate the cookbook cache for this PR. | |
| - Run ID: [${{ github.run_id }}] | |
| - Triggering actor: ${{ github.triggering_actor }} | |
| - Target branch: ${{ github.ref_name }} | |
| - Deployment branch: ${{ env.DEPLOY_BRANCH }} | |
| [${{ github.run_id }}]: ${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }} | |
| - name: Create check | |
| if: github.event_name == 'workflow_dispatch' && inputs.pr_number != '' | |
| id: create-check | |
| uses: actions/github-script@v6 | |
| with: | |
| script: | | |
| const created_run = await github.request( | |
| 'POST /repos/{owner}/{repo}/check-runs', | |
| { | |
| owner: context.repo.owner, | |
| repo: context.repo.repo, | |
| name: '${{ github.job }}', | |
| head_sha: '${{ github.sha }}', | |
| details_url: '${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }}', | |
| status: 'in_progress', | |
| started_at: new Date().toISOString(), | |
| output: { | |
| title: 'Regenerate example notebook cache', | |
| summary: 'Results and progress: ${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }}', | |
| text: '' | |
| }, | |
| headers: { | |
| 'X-GitHub-Api-Version': '2022-11-28' | |
| } | |
| } | |
| ) | |
| return created_run.data.id | |
| - uses: actions/checkout@v3 | |
| - name: Install Conda environment | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: devtools/conda-envs/examples_env.yml | |
| # default - will pull down 2.0 which we don't want! | |
| # micromamba-version: latest | |
| # pin to latest 1.x release | |
| micromamba-version: "1.5.10-0" | |
| - name: Pre-process and execute notebooks | |
| shell: bash -l {0} | |
| run: | | |
| set -e | |
| python source/_ext/proc_examples.py --prefix=deploy/ --cache-branch=${DEPLOY_BRANCH} --log-failures=notebooks_log.json | |
| - name: Read notebooks log | |
| if: always() | |
| shell: bash -l {0} | |
| run: echo "NOTEBOOKS_LOG=$(cat 'notebooks_log.json')" >> "$GITHUB_ENV" | |
| - name: Deploy cache | |
| shell: bash -l {0} | |
| run: | | |
| cd deploy | |
| git config --global user.name github-actions | |
| git config --global user.email [email protected] | |
| git config --global init.defaultBranch main | |
| # Create an empty repository so we don't have to fetch (guaranteeing atomicity) | |
| git init . | |
| git remote add origin "https://github-actions:${{ github.token }}@github.com/${{ github.repository }}.git" | |
| # Commit the deployment and force push to the deploy branch | |
| git add . | |
| git commit -m "Deploy pre-processed notebook cache" | |
| git push --force origin HEAD:$DEPLOY_BRANCH | |
| - name: Trigger RTD build | |
| # RTD doesn't offer a way to manually trigger builds in PRs, so we'll just do this for other builds | |
| if: github.event_name == 'schedule' || github.event_name == 'push' || (github.event_name == 'workflow_dispatch' && inputs.pr_number == '') | |
| shell: bash -l {0} | |
| run: | | |
| curl -X POST -d "branches=$GITHUB_REF_NAME" -d "token=${{ secrets.RTD_WEBHOOK_TOKEN }}" https://readthedocs.org/api/v2/webhook/openff-docs/243876/ | |
| - name: Report status to PR | |
| id: reportStatusToPr | |
| if: always() && github.event_name == 'workflow_dispatch' && inputs.pr_number != '' | |
| uses: thollander/actions-comment-pull-request@v2 | |
| with: | |
| pr_number: ${{ inputs.pr_number }} | |
| message: > | |
| A workflow dispatched to regenerate the cookbook cache for this PR has just finished. | |
| - Run ID: [${{ github.run_id }}] | |
| - Triggering actor: ${{ github.triggering_actor }} | |
| - Target branch: ${{ github.ref_name }} | |
| - Deployment branch: ${{ env.DEPLOY_BRANCH }} | |
| - Job status: **${{ job.status }}** | |
| - Notebooks status: ${{fromJSON(env.NOTEBOOKS_LOG).n_successful}} / ${{fromJSON(env.NOTEBOOKS_LOG).n_total}} notebooks successfully executed (${{fromJSON(env.NOTEBOOKS_LOG).n_ignored}} failures ignored) | |
| ${{(fromJSON(env.NOTEBOOKS_LOG).failed || fromJSON(env.NOTEBOOKS_LOG).ignored) && '- Failing notebooks: | |
| - ' || ''}}${{join(fromJSON(env.NOTEBOOKS_LOG).failed, ' | |
| - ')}}${{fromJSON(env.NOTEBOOKS_LOG).ignored && ' | |
| - [ignored] ' || ''}}${{join(fromJSON(env.NOTEBOOKS_LOG).ignored, ' | |
| - [ignored] ')}} | |
| Changes will only be visible in the ReadTheDocs | |
| preview after it has been [rebuilt]. | |
| [${{ github.run_id }}]: ${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }} | |
| [rebuilt]: https://readthedocs.org/projects/openff-docs/builds/ | |
| - name: Report status to PR on templating failure | |
| if: always() && steps.reportStatusToPr.outcome == 'failure' | |
| uses: thollander/actions-comment-pull-request@v2 | |
| with: | |
| pr_number: ${{ inputs.pr_number }} | |
| message: > | |
| A workflow dispatched to regenerate the cookbook cache for this PR has just finished. | |
| - Run ID: [${{ github.run_id }}] | |
| - Triggering actor: ${{ github.triggering_actor }} | |
| - Target branch: ${{ github.ref_name }} | |
| - Deployment branch: ${{ env.DEPLOY_BRANCH }} | |
| - Job status: **${{ job.status }}** | |
| - Notebooks status: N/A | |
| Changes will only be visible in the ReadTheDocs | |
| preview after it has been [rebuilt]. | |
| [${{ github.run_id }}]: ${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }} | |
| [rebuilt]: https://readthedocs.org/projects/openff-docs/builds/ | |
| - name: Update check | |
| if: always() && github.event_name == 'workflow_dispatch' && inputs.pr_number != '' | |
| uses: actions/github-script@v6 | |
| with: | |
| script: | | |
| await github.request( | |
| 'PATCH /repos/{owner}/{repo}/check-runs/{check_run_id}', | |
| { | |
| owner: context.repo.owner, | |
| repo: context.repo.repo, | |
| check_run_id: ${{ steps.create-check.outputs.result }}, | |
| status: 'completed', | |
| conclusion: '${{ job.status }}', | |
| completed_at: new Date().toISOString(), | |
| headers: { | |
| 'X-GitHub-Api-Version': '2022-11-28' | |
| } | |
| } | |
| ) |