build-deploy-rmd #210
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| schedule: | |
| - cron: '0 9 * * 3' | |
| name: build-deploy-rmd | |
| jobs: | |
| build-deploy-rmd: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'release'} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RSPM: ${{ matrix.config.rspm }} | |
| CRAN: ${{ matrix.config.cran }} | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: Check out repo | |
| uses: actions/checkout@v2 | |
| with: | |
| submodules: true | |
| - name: Set up R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - name: Set up pandoc | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| ## rcrossref requires an email address associated with a query | |
| - name: Set up crossref email | |
| run: | | |
| echo crossref_email=\"${{ secrets.CROSSREF_EMAIL }}\" >> ~/.Renviron | |
| - name: Install dependencies | |
| run: | | |
| install.packages(c('remotes', 'dplyr', 'ggplot2', 'rmarkdown', | |
| 'knitr', 'tibble', 'tidyr', | |
| 'lubridate', 'gh', 'jsonlite', 'purrr', | |
| 'DT', 'plotly', 'citecorp', 'readr', | |
| 'viridis', 'wordcloud'), Ncpu = 2L) | |
| remotes::install_github('ropensci/rcrossref') | |
| shell: Rscript {0} | |
| - name: Session info | |
| run: | | |
| install.packages('sessioninfo', Ncpus = 2L) | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| shell: Rscript {0} | |
| - name: Render site | |
| run: | | |
| rmarkdown::render(input = "joss-submission-analytics.Rmd", clean = FALSE) | |
| shell: Rscript {0} | |
| - name: Prepare files to deploy | |
| run: | | |
| mkdir _site | |
| cp -r joss-submission-analytics_files joss-submission-analytics.html _site/ | |
| cp -r joss_submission_analytics.rds _site/ | |
| cp -r joss_submission_citations_byjournal.tsv _site/ | |
| cp -r joss_submission_citations.tsv _site/ | |
| - name: Deploy 🚀 | |
| uses: JamesIves/github-pages-deploy-action@releases/v3 | |
| with: | |
| ACCESS_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| BRANCH: gh-pages | |
| FOLDER: _site | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@master | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check | |
| - name: upload artifact | |
| uses: actions/upload-artifact@v1 | |
| with: | |
| name: submissionanalytics | |
| path: joss_submission_analytics.rds |