Merge pull request #68 from opentargets/remove-unused-seu-field

Remove `seu` field from variant.
opentargets · Jul 15, 2022 · a85290a · a85290a
2 parents 21f53c2 + 366325d
commit a85290a
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diff --git a/app/models/database/FRM.scala b/app/models/database/FRM.scala
@@ -119,8 +119,6 @@ object FRM {
 
     def gnomadAFR = column[Option[Double]]("gnomad_afr")
 
-    def gnomadSEU = column[Option[Double]]("gnomad_seu")
-
     def gnomadAMR = column[Option[Double]]("gnomad_amr")
 
     def gnomadASJ = column[Option[Double]]("gnomad_asj")
@@ -156,7 +154,6 @@ object FRM {
     def gnomadAnnotations =
       (
         gnomadAFR,
-        gnomadSEU,
         gnomadAMR,
         gnomadASJ,
         gnomadEAS,

diff --git a/app/models/entities/DNA.scala b/app/models/entities/DNA.scala
@@ -87,7 +87,6 @@ object DNA {
 
   case class GnomadAnnotation(
                                afr: Option[Double] = None,
-                               seu: Option[Double] = None,
                                amr: Option[Double] = None,
                                asj: Option[Double] = None,
                                eas: Option[Double] = None,

diff --git a/app/models/implicits/EsImplicits.scala b/app/models/implicits/EsImplicits.scala
@@ -46,7 +46,6 @@ object EsImplicits {
 
   implicit val gnomadAnnotation: Reads[GnomadAnnotation] = (
     (JsPath \ "gnomad_afr").readNullable[Double] and
-      (JsPath \ "gnomad_seu").readNullable[Double] and
       (JsPath \ "gnomad_amr").readNullable[Double] and
       (JsPath \ "gnomad_asj").readNullable[Double] and
       (JsPath \ "gnomad_eas").readNullable[Double] and