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    389 repositories

    • biofile-finder

      Public
      An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.
      TypeScript
      •
      BSD 3-Clause "New" or "Revised" License
      •1•3•43•3•Updated Oct 4, 2024Oct 4, 2024

    • merquaco

      Public
      Python
      •
      Other
      •2•1•0•0•Updated Oct 3, 2024Oct 3, 2024

    • npc_sessions_cache

      Public
      Scripts, notebooks and plots that operate on NWB or NWB-like objects from `npc_sessions` in the cloud.
      Python
      •0•0•0•0•Updated Oct 3, 2024Oct 3, 2024

    • mtrain_regimens

      Public
      Repository to track training stages and regimens for visual behavior
      Python
      •
      Other
      •4•2•14•0•Updated Oct 3, 2024Oct 3, 2024

    • openscope_psycode

      Public
      This repository contains the stimulus behind the PsyCode project
      Jupyter Notebook
      •
      Apache License 2.0
      •8•1•0•0•Updated Oct 3, 2024Oct 3, 2024

    • npc_samstim

      Public
      Tools for processing stim data from Sam's DynamicRoutingTask, compatible with data in the cloud.
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 3, 2024Oct 3, 2024

    • deep-neurographs

      Public
      Deep-Neurographs is a Python module that utilizes machine learning to detect and correct false splits in a predicted neuron segmentation.
      Python
      •
      MIT License
      •0•3•0•0•Updated Oct 3, 2024Oct 3, 2024

    • npc_stim

      Public
      Tools for accessing and processing stim data, compatible with data in the cloud.
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 3, 2024Oct 3, 2024

    • openscope_mousemotion

      Public
      Moving dot stimuli for the OpenScope MouseMotion project
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Oct 3, 2024Oct 3, 2024

    • microns_tutorial

      Public
      MICrONS databook and analysis tutorials
      Jupyter Notebook
      •2•1•0•0•Updated Oct 3, 2024Oct 3, 2024

    • TEM_comms

      Public
      Pigeon messages for the next generation TEM imaging system
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Oct 2, 2024Oct 2, 2024

    • MIES

      Public
      Multichannel Igor Electrophysiology Suite
      electrophysiologyigor-prosupported
      IGOR Pro
      •
      Other
      •6•22•289•10•Updated Oct 2, 2024Oct 2, 2024

    • npc_sessions

      Public
      Tools for accessing and packaging data from behavior and epyhys sessions from the Mindscope Neuropixels team, in the cloud.
      Python
      •1•1•54•1•Updated Oct 1, 2024Oct 1, 2024

    • neuroanalysis-test-data

      Public
      Test data submodule for neuroanalysis package
      1•0•0•0•Updated Oct 1, 2024Oct 1, 2024

    • sciduck

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•10•0•Updated Oct 1, 2024Oct 1, 2024

    • npc_sync

      Public
      Repackaging of AllenSDK.SyncDataset with extra functionality, compatible with data in the cloud.
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 1, 2024Oct 1, 2024

    • axonal_connectomics

      Public
      Repository for tools developed for axonal connectomics
      Jupyter Notebook
      •
      Other
      •0•2•3•0•Updated Oct 1, 2024Oct 1, 2024

    • npc_lims

      Public
      Tools to fetch and update paths, metadata and state for Mindscope Neuropixels sessions, in the cloud.
      Python
      •
      MIT License
      •0•0•6•1•Updated Oct 1, 2024Oct 1, 2024

    • IPNWB

      Public
      IGOR Pro
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•5•0•Updated Sep 29, 2024Sep 29, 2024

    • TEM_config

      Public
      0•0•2•0•Updated Sep 28, 2024Sep 28, 2024

    • EM_MC_paper_figures

      Public
      Notebooks for analyzing and generating figures for EM MC paper
      Jupyter Notebook
      •
      Other
      •0•1•0•0•Updated Sep 27, 2024Sep 27, 2024

    • ET_connectivity

      Public
      Code used to analyze the connectivity of ET neurons in MICrONs dataset
      Jupyter Notebook
      •
      Other
      •0•3•0•0•Updated Sep 27, 2024Sep 27, 2024

    • brain_observatory_utilities

      Public
      A repository for analysis tools for data available from the AllenSDK
      Jupyter Notebook
      •
      Other
      •2•4•11•2•Updated Sep 26, 2024Sep 26, 2024

    • dynamic_routing_analysis

      Public
      Tools for accessing, processing and presenting data from Dynamic Routing experiments.
      Jupyter Notebook
      •0•1•0•0•Updated Sep 26, 2024Sep 26, 2024

    • npc_ephys

      Public
      Tools for accessing and processing raw ephys data, compatible with data in the cloud.
      Python
      •
      MIT License
      •2•0•0•0•Updated Sep 26, 2024Sep 26, 2024

    • npc_mvr

      Public
      Tools for reading raw video data from MindScope Neuropixels experiments, compatible with data in the cloud.
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 25, 2024Sep 25, 2024

    • asap-modules

      Public
      Shared repo for EM connectomics and Array Tomography render based image processing modules
      Python
      •
      BSD 2-Clause "Simplified" License
      •4•14•12•0•Updated Sep 25, 2024Sep 25, 2024

    • neuroanalysis

      Public
      Modular analysis tools for neurophysiology data
      Python
      •
      MIT License
      •10•7•1•2•Updated Sep 25, 2024Sep 25, 2024

    • cell_type_mapper

      Public
      Repository for storing prototype functionality implementations for the BKP
      Python
      •
      Other
      •4•17•3•2•Updated Sep 25, 2024Sep 25, 2024

    • TEM_setup

      Public
      Setup instructions and script for the TEM computers.
      Shell
      •0•0•0•0•Updated Sep 24, 2024Sep 24, 2024