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    39 repositories

    • findr

      Public
      FINDR: Flow-field Inference from Neural Data using deep Recurrent networks
      neurosciencelatent-variable-modelsneural-differential-equations
      Jupyter Notebook
      •
      Apache License 2.0
      •0•1•0•0•Updated Oct 1, 2024Oct 1, 2024

    • jbreda_animal_training

      Public
      Repository for the ingestion, cleaning and visualization of behavioral experiments
      Jupyter Notebook
      •0•0•39•0•Updated Sep 28, 2024Sep 28, 2024

    • chronic_neuropixels

      Public
      Repository of code, data and CAD files associated with Luo*, Bondy* et al (2020). "An approach for long-term, multi-probe Neuropixels recordings in unrestrained rats"
      MATLAB
      •
      Apache License 2.0
      •5•6•0•0•Updated Sep 20, 2024Sep 20, 2024

    • DePasquale-eLife-2024

      Public
      Data and analysis notebooks for DePasquale et. al eLife 2024
      Jupyter Notebook
      •
      Apache License 2.0
      •0•1•0•0•Updated Sep 16, 2024Sep 16, 2024

    • DataJoint2Julia.jl

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Sep 10, 2024Sep 10, 2024

    • PulseInputDDM.jl

      Public
      A Julia library for fitting DDMs to pulse-based evidence accumulations task data
      julialangneuroscience-methodsdrift-diffusion-model
      Julia
      •
      Apache License 2.0
      •3•5•2•1•Updated Aug 30, 2024Aug 30, 2024

    • bl_pipeline_python

      Public
      Python Data pipeline for BrodyLab
      Jupyter Notebook
      •3•0•0•0•Updated Jul 30, 2024Jul 30, 2024

    • MixtureAgentsModels

      Public
      Julia
      •
      MIT License
      •0•6•0•0•Updated Jul 4, 2024Jul 4, 2024

    • adrian_striatum_analysis

      Public
      code for wrangling and organizing striatum ephys recordings and associated GLM fits
      MATLAB
      •0•0•0•0•Updated Jun 22, 2024Jun 22, 2024

    • JRCLUST

      Public
      JRCLUST
      MATLAB
      •
      Apache License 2.0
      •22•0•2•0•Updated Jun 6, 2024Jun 6, 2024

    • flexible_decision_making_rnn

      Public
      Apache License 2.0
      •0•0•0•0•Updated May 31, 2024May 31, 2024

    • datajoint-tutorials

      Public
      Getting started materials for DataJoint - with Calcium Imaging, Electrophysiology, Machine Learning examples
      Jupyter Notebook
      •122•0•0•0•Updated May 17, 2024May 17, 2024

    • neu_437_public

      Public
      Public-facing repository for NEU 437 problem sets. Includes python notebooks (without answers) and associated data.
      Jupyter Notebook
      •0•0•0•0•Updated Apr 21, 2024Apr 21, 2024

    • accumulation-model

      Public
      Code for forward and backwards analytical solution to a drift diffusion advection model with pulse-based evidence
      MATLAB
      •1•0•0•0•Updated Apr 1, 2024Apr 1, 2024

    • neuroGLM

      Public
      Fitting and analysis of trial-based neural spike responses with Generalized Linear Model (GLM).
      MATLAB
      •
      MIT License
      •38•0•0•0•Updated Feb 15, 2024Feb 15, 2024

    • trialhistory_lapses_EA

      Public
      This repository contains code for generating figures for the manuscript "Trial-history biases in evidence accumulation can give rise to apparent lapses"
      MATLAB
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 20, 2023Nov 20, 2023

    • flexible_decision_making_training

      Public
      Training code for the rat flexible decision-making task
      MATLAB
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 17, 2023Nov 17, 2023

    • Kilosort2

      Public
      Fast spike sorting with drift correction for up to a thousand channels
      MATLAB
      •
      GNU General Public License v2.0
      •240•1•0•0•Updated Sep 6, 2023Sep 6, 2023

    • SGLXMetaToCoords

      Public
      Code to create geometry files for sorting from SpikeGLX metadata
      Python
      •3•0•0•0•Updated Jul 21, 2023Jul 21, 2023

    • emilyjandennis_PRA

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Apr 28, 2023Apr 28, 2023

    • boydmeredith_training_report

      Public
      GUI to monitor performance with training on PBups pipeline
      MATLAB
      •0•0•0•0•Updated Apr 25, 2023Apr 25, 2023

    • boydmeredith_bings_model_demo

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Feb 21, 2023Feb 21, 2023

    • boydmeredith_GitHubWorkflow_TipsAndTricks

      Public
      0•0•0•0•Updated Feb 7, 2023Feb 7, 2023

    • Brody-Lab.github.io

      Public
      This the lab wiki
      0•0•0•0•Updated Feb 2, 2023Feb 2, 2023

    • flexible_decision_making_rats

      Public
      Apache License 2.0
      •0•0•0•0•Updated Jan 21, 2023Jan 21, 2023

    • rnn_linearization

      Public
      Code about linearization of RNNs
      Apache License 2.0
      •0•0•0•0•Updated Jan 19, 2023Jan 19, 2023

    • carlos_lowrank_inference_valente_ostojic

      Public
      Fitting low-rank RNNs to neural trajectories (LINT method).
      Jupyter Notebook
      •5•0•0•0•Updated Dec 26, 2022Dec 26, 2022

    • jbreda_PWM_mPFC_analysis

      Public
      repository for analysis of PWM ephys data
      Jupyter Notebook
      •0•0•0•0•Updated Nov 21, 2022Nov 21, 2022

    • jbreda_kilosort

      Public
      Pipeline that allows for tetrode recordings to be sorted in Kilosort
      Jupyter Notebook
      •1•0•0•0•Updated Nov 13, 2022Nov 13, 2022

    • brunton_dataset

      Public
      0•0•0•0•Updated Sep 6, 2022Sep 6, 2022