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@Eco-Flow Eco-Flow

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    14 repositories

    • genomeqc

      Public
      Compare the quality of multiple genomes, along with their annotations.
      Nextflow
      •
      MIT License
      •8•0•0•0•Updated Oct 30, 2024Oct 30, 2024

    • test-datasets

      Public
      Test data to be used for automated testing with the nf-core pipelines
      MIT License
      •351•0•0•0•Updated Oct 29, 2024Oct 29, 2024

    • synteny

      Public
      A Nextflow pipeline for running synteny analysis.
      Perl
      •
      Other
      •2•12•16•0•Updated Oct 25, 2024Oct 25, 2024

    • docker-build

      Public
      A repository containing Dockerfiles for containers used within Eco-Flow's Nextflow pipelines.
      Dockerfile
      •
      MIT License
      •0•1•0•0•Updated Oct 25, 2024Oct 25, 2024

    • excon

      Public
      A pipeline to measure gene family expansion and contraction
      Perl
      •
      MIT License
      •1•3•14•0•Updated Oct 12, 2024Oct 12, 2024

    • configs

      Public
      Config files used to define parameters specific to compute environments at different Institutions
      Nextflow
      •
      MIT License
      •271•0•0•0•Updated Oct 11, 2024Oct 11, 2024

    • modules

      Public
      Repository to host tool-specific module files for the Nextflow DSL2 community!
      Nextflow
      •
      MIT License
      •713•0•0•0•Updated Sep 6, 2024Sep 6, 2024

    • pollen-metabarcoding

      Public
      A pipeline developled in collaboration with Exeter University
      Nextflow
      •0•1•5•0•Updated Aug 30, 2024Aug 30, 2024

    • comparete

      Public
      A pipeline to compare TE content across genomes
      Perl
      •
      MIT License
      •0•0•6•0•Updated Aug 25, 2024Aug 25, 2024

    • training

      Public
      A repository to run training courses
      Shell
      •
      MIT License
      •1•3•3•0•Updated Aug 20, 2024Aug 20, 2024

    • Eco-Flow.github.io

      Public
      Eco-Flow webpage
      2•4•0•0•Updated Aug 17, 2024Aug 17, 2024

    • .github

      Public
      Files for Eco-flow Github
      0•0•0•0•Updated May 10, 2024May 10, 2024

    • Eco-Flow_configs

      Public
      A repository to store config files set up for specific HPCs.
      1•1•0•0•Updated Mar 15, 2024Mar 15, 2024

    • Eco-Flow

      Public
      0•0•1•0•Updated Jan 9, 2024Jan 9, 2024