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    89 repositories

    • data_access_library

      Public
      Data access library Demo Code and Contribution Guide
      Jupyter Notebook
      •
      MIT License
      •1•1•1•0•Updated Nov 16, 2024Nov 16, 2024

    • laser

      Public
      Light Agent Spatial modeling for ERadication
      Python
      •
      MIT License
      •5•2•30•2•Updated Nov 15, 2024Nov 15, 2024

    • idmtools

      Public
      Python
      •
      Other
      •4•4•46•10•Updated Nov 15, 2024Nov 15, 2024

    • laser-measles

      Public
      Measles model implementations based on LASER toolkit.
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 15, 2024Nov 15, 2024

    • AIAugmentedSurveyResponseCategorization

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Nov 14, 2024Nov 14, 2024

    • clusteringForVarietyIdentification

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • SmallAreaEstimationForSurveyIndicators

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • EMOD-Generic-Scripts

      Public
      Demonstration simulations using Generic-Ongoing branch of EMOD
      Python
      •2•1•1•0•Updated Nov 12, 2024Nov 12, 2024

    • EMOD-Generic

      Public
      Source files for building IDM's EMOD computational epidemiology software.
      C
      •
      Other
      •2•1•0•0•Updated Nov 10, 2024Nov 10, 2024

    • MOSAIC-docs

      Public
      Documentation for the Metapopulation Outbreak Simulation with Agent-based Implementation for Cholera (MOSAIC).
      R
      •0•0•0•0•Updated Nov 8, 2024Nov 8, 2024

    • MOSAIC-pkg

      Public
      The R package for the Metapopulation Outbreak Simulation with Agent-based Implementation for Cholera (MOSAIC).
      R
      •0•0•7•0•Updated Nov 6, 2024Nov 6, 2024

    • synthpops

      Public
      Create synthetic populations for COVID-19 epidemic analyses.
      networkscovid-19
      Python
      •
      Other
      •44•44•3•0•Updated Nov 1, 2024Nov 1, 2024

    • Deep-Learning-GIS-Regression

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •1•0•0•0•Updated Oct 29, 2024Oct 29, 2024

    • vis-tools

      Public
      Visualization Toolkit
      JavaScript
      •
      Other
      •11•17•2•2•Updated Oct 28, 2024Oct 28, 2024

    • malaria-model_validation

      Public
      Python
      •2•1•16•0•Updated Oct 16, 2024Oct 16, 2024

    • emodpy-snt

      Public
      SNT Workflow for EMODPY
      R
      •
      MIT License
      •4•0•5•2•Updated Oct 7, 2024Oct 7, 2024

    • MOSAIC-data

      Public
      A repository containing raw and processed data for the Metapopulation Outbreak Simulation with Agent-based Implementation for Cholera (MOSAIC).
      0•0•0•0•Updated Sep 24, 2024Sep 24, 2024

    • PACE-HRH-UI

      Public
      PACE-HRH-UI is a health capacity estimation tool built using R and Shinyapps
      R
      •
      MIT License
      •2•3•2•0•Updated Sep 10, 2024Sep 10, 2024

    • winogrande-mmlu-clinical-za

      Public
      Expanding Reasoning Benchmarks in Low-Resourced African Languages: Winogrande and Clinical MMLU in Afrikaans, Xhosa, and Zulu
      Jupyter Notebook
      •
      MIT License
      •0•1•0•3•Updated Aug 20, 2024Aug 20, 2024

    • GWSpatialGenetics

      Public
      The Institute of Disease Modeling interdisciplinary collaboration with Elizabeth Thiele (Vassar) and James Cotton (Wellcome Sanger Institute) to maximize the value of epidemiological and genetics data to understand Guinea worm transmission in Chad.
      HTML
      •3•2•2•0•Updated Aug 2, 2024Aug 2, 2024

    • deepfacility

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Jul 31, 2024Jul 31, 2024

    • PACE-HRH

      Public
      PACE-HRH (Population-Aware Capacity Estimator for Human Resources for Health)
      R
      •
      MIT License
      •4•3•21•2•Updated Jul 3, 2024Jul 3, 2024

    • covasim

      Public
      COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions
      simulationmodelabmstochasticepidemiologyagent-basednpicoronaviruscovid-19covid
      Python
      •
      MIT License
      •223•252•16•5•Updated Jul 2, 2024Jul 2, 2024

    • IDM-CMS

      Public
      IDM compartmental modeling software (CMS)
      simulationidmmsestochasticcms
      C#
      •
      Other
      •10•7•9•3•Updated Jun 18, 2024Jun 18, 2024

    • emodpy-typhoid

      Public
      Python API for EMOD-Typhoid model
      Python
      •
      Creative Commons Zero v1.0 Universal
      •3•0•8•0•Updated May 31, 2024May 31, 2024

    • cms-containerized

      Public
      CMS in a Docker container with examples
      Scheme
      •
      MIT License
      •1•0•0•0•Updated May 20, 2024May 20, 2024

    • hpvsim

      Public
      Human papillomavirus simulator (HPVsim)
      Python
      •
      MIT License
      •1•7•0•0•Updated Mar 15, 2024Mar 15, 2024

    • abm-software-comparison

      Public
      ABM software comparison for spatial disease modeling
      MIT License
      •0•1•0•0•Updated Feb 13, 2024Feb 13, 2024

    • cookiecutter-dash-ui

      Public
      cookiecutter project for a dash UI
      Python
      •0•2•1•1•Updated Feb 2, 2024Feb 2, 2024

    • tskit

      Public
      Analyse, create and manipulate tree sequences.
      Python
      •
      MIT License
      •73•0•0•0•Updated Jan 26, 2024Jan 26, 2024