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@KiddLab Kidd Lab at the University of Michigan

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    18 repositories

    • dog-numts-tracks

      Public
      0•0•0•0•Updated Sep 9, 2024Sep 9, 2024

    • dog-segdup-tracks

      Public
      Trackhub for Dog Genome SegDup Analysis
      0•0•0•0•Updated Mar 21, 2024Mar 21, 2024

    • QuicK-mer2

      Public
      C
      •1•11•1•0•Updated Apr 3, 2023Apr 3, 2023

    • fastCN

      Public
      Python
      •
      GNU General Public License v3.0
      •1•4•1•0•Updated Jul 11, 2022Jul 11, 2022

    • tasha_genome_hub

      Public
      HTML
      •0•0•0•0•Updated Apr 12, 2021Apr 12, 2021

    • run_canu_bac

      Public
      Run Canu v2.1 for use with BACs
      Python
      •0•0•0•0•Updated Oct 12, 2020Oct 12, 2020

    • zoey_genome_hub

      Public
      Track Hub for Zoey Genome Project
      HTML
      •0•1•0•0•Updated Jul 17, 2020Jul 17, 2020

    • hiv-zipcode-tools

      Public
      Tools for extraction and clustering of HIV zipcodes
      Python
      •0•0•0•0•Updated Apr 8, 2020Apr 8, 2020

    • run_unicycler

      Public
      Pipeline to run Unicycler assembly of BACs
      Python
      •0•0•0•0•Updated Feb 3, 2020Feb 3, 2020

    • kmer_1KG

      Public
      QuicKmer2 k-mer analysis of 1000 Genomes Data
      1•2•0•0•Updated Jan 10, 2020Jan 10, 2020

    • insertion-genotype

      Public
      Genotyping Mobile Element Insertions based on remapping reads
      Python
      •1•2•0•0•Updated May 22, 2019May 22, 2019

    • hapfilter-10X

      Public
      Python
      •0•0•0•0•Updated May 9, 2018May 9, 2018

    • Pendleton_2018_Selection_Scan

      Public
      Track hub and scripts for domestication selection paper (Pendleton, et al 2017)
      Python
      •0•0•0•0•Updated Apr 24, 2018Apr 24, 2018

    • insertion-assembly

      Public
      Pipeline for performing local assembly mobile element insertions using Illumina sequencing reads based on initial RetroSeq calls
      Python
      •1•7•1•0•Updated Nov 16, 2016Nov 16, 2016

    • QuicK-mer

      Public
      Python
      •0•8•0•0•Updated Nov 9, 2016Nov 9, 2016

    • jumps-map

      Public
      Python
      •2•0•0•0•Updated Jul 13, 2016Jul 13, 2016

    • pacbio-vector-trim

      Public
      Script for trimming vector reads prior to PacBio pooled clone assembly
      Python
      •0•1•0•0•Updated Sep 15, 2015Sep 15, 2015

    • random-sample-by-ppm

      Public
      Randomly sample genomic positions based on a Position Probability Matrix
      Python
      •0•2•0•0•Updated Jul 2, 2015Jul 2, 2015