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@KiddLab

Kidd Lab at the University of Michigan

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  1. QuicK-mer2 QuicK-mer2 Public

    C 11 1

  2. QuicK-mer QuicK-mer Public

    Python 8

  3. insertion-assembly insertion-assembly Public

    Pipeline for performing local assembly mobile element insertions using Illumina sequencing reads based on initial RetroSeq calls

    Python 7 1

  4. fastCN fastCN Public

    Python 4 1

  5. random-sample-by-ppm random-sample-by-ppm Public

    Randomly sample genomic positions based on a Position Probability Matrix

    Python 2

  6. insertion-genotype insertion-genotype Public

    Genotyping Mobile Element Insertions based on remapping reads

    Python 2 1

Repositories

Showing 10 of 18 repositories
  • dog-numts-tracks Public
    KiddLab/dog-numts-tracks’s past year of commit activity
    0 0 0 0 Updated Sep 9, 2024
  • dog-segdup-tracks Public

    Trackhub for Dog Genome SegDup Analysis

    KiddLab/dog-segdup-tracks’s past year of commit activity
    0 0 0 0 Updated Mar 21, 2024
  • QuicK-mer2 Public
    KiddLab/QuicK-mer2’s past year of commit activity
    C 11 1 1 0 Updated Apr 3, 2023
  • fastCN Public
    KiddLab/fastCN’s past year of commit activity
    Python 4 GPL-3.0 1 1 0 Updated Jul 11, 2022
  • tasha_genome_hub Public
    KiddLab/tasha_genome_hub’s past year of commit activity
    HTML 0 0 0 0 Updated Apr 12, 2021
  • run_canu_bac Public

    Run Canu v2.1 for use with BACs

    KiddLab/run_canu_bac’s past year of commit activity
    Python 0 0 0 0 Updated Oct 12, 2020
  • zoey_genome_hub Public

    Track Hub for Zoey Genome Project

    KiddLab/zoey_genome_hub’s past year of commit activity
    HTML 1 0 0 0 Updated Jul 17, 2020
  • hiv-zipcode-tools Public

    Tools for extraction and clustering of HIV zipcodes

    KiddLab/hiv-zipcode-tools’s past year of commit activity
    Python 0 0 0 0 Updated Apr 8, 2020
  • run_unicycler Public

    Pipeline to run Unicycler assembly of BACs

    KiddLab/run_unicycler’s past year of commit activity
    Python 0 0 0 0 Updated Feb 3, 2020
  • kmer_1KG Public

    QuicKmer2 k-mer analysis of 1000 Genomes Data

    KiddLab/kmer_1KG’s past year of commit activity
    2 1 0 0 Updated Jan 10, 2020
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