Sentieon

All

16 repositories

sentieon-cli
Public
A command-line interface for Sentieon pipelines
Python
•
BSD 2-Clause "Simplified" License
•2•5•0•0•Updated Oct 31, 2024Oct 31, 2024
sentieon-scripts
Public
Helper scripts for biological data processing from Sentieon
Shell
•
BSD 2-Clause "Simplified" License
•21•63•2•0•Updated Oct 23, 2024Oct 23, 2024
sentieon-amazon-omics
Public
Sentieon pipelines for AWS HealthOmics
WDL
•
BSD 2-Clause "Simplified" License
•3•8•0•0•Updated Oct 15, 2024Oct 15, 2024
sentieon-models
Public
Model files for Sentieon variant callers
2•13•0•0•Updated Aug 8, 2024Aug 8, 2024
terraform
Public
Terraform configuration files for the Sentieon software
HCL
•
BSD 2-Clause "Simplified" License
•2•1•0•0•Updated Jul 10, 2024Jul 10, 2024
sentieon-docker
Public
Example Dockerfiles for use with the Sentieon software
dockerfiles sentieon sentieon-docker
Dockerfile
•
BSD 2-Clause "Simplified" License
•6•9•0•0•Updated Jul 10, 2024Jul 10, 2024
hap-eval
Public
A VCF comparison engine for structual variant benchmarking
Python
•
BSD 2-Clause "Simplified" License
•3•19•3•0•Updated Apr 10, 2024Apr 10, 2024
vcflib
Public
An open-source Python library for parsing and manipulation of VCF
Python
•
BSD 2-Clause "Simplified" License
•2•8•0•0•Updated Apr 9, 2024Apr 9, 2024
aws-benchmark-scripts
Public
Scripts used in benchmarking Sentieon DNAseq and DNAscope pipelines on AWS EC2
Python
•3•5•0•0•Updated Jan 25, 2024Jan 25, 2024
sentieon-google-genomics
Public
Run Sentieon pipelines on Google Cloud Platform
somatic-variants gcp bioinformatics-pipeline cloud-computing speedup genomic-data-analysis ngs-pipeline germline-variants sentieon
Shell
•
BSD 2-Clause "Simplified" License
•7•6•0•0•Updated Aug 28, 2023Aug 28, 2023
Sentieon-WDL
Public
WDL pipelines for the Sentieon tools
wdl-workflow sentieon ccdg functional-equivalent-pipeline fastq2vcf
WDL
•
BSD 2-Clause "Simplified" License
•3•9•0•0•Updated Dec 29, 2022Dec 29, 2022
sentieon-dnascope-ml
Public
Sentieon DNAscope + Machine Learning Model
machine-learning next-generation-sequencing dna bioinformatics-pipeline variant-calling germline-variants sentieon genomics-data dnascope
Shell
•4•12•0•0•Updated Jan 31, 2022Jan 31, 2022
sentieon-matching-performance
Public
Accuracy and runtime benchmarks for the Sentieon GATK-matching tools
Shell
•
BSD 2-Clause "Simplified" License
•3•6•0•0•Updated Mar 19, 2021Mar 19, 2021
sentieon-dnaseq
Public archive
Sentieon DNAseq
acceleration gatk bioinformatics-pipeline variant-calling dnaseq bwa-mem dna-sequencing sentieon gatk4 genomics-data
Shell
•12•22•0•0•Updated Dec 30, 2020Dec 30, 2020
Sentieon-cwl
Public
CWL pipelines for the Sentieon tools
distributed-computing ngs-pipeline sentieon cwl-standards toil-supports
Common Workflow Language
•
BSD 2-Clause "Simplified" License
•2•4•0•0•Updated Oct 22, 2018Oct 22, 2018
toil
Public
A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python
Python
•
Apache License 2.0
•240•0•0•0•Updated Jun 12, 2018Jun 12, 2018