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    • shepherd

      Public
      A set of scripts for defining batches of work that are then tracked to failure or (possibly partial) completion.
      Python
      MIT License
      0000Updated Oct 10, 2019Oct 10, 2019
    • A very simple python script for converting bytes to MB, GB, TB
      Python
      1110Updated Aug 20, 2019Aug 20, 2019
    • *For use by the Submissions Team* A collection of scripts and steps for sharing data (initially used as a part of the TOPMed submissions pipeline)
      Python
      MIT License
      0010Updated Jul 30, 2019Jul 30, 2019
    • Sample Java application referred to by Azure Pipelines documentation
      Java
      Creative Commons Attribution 4.0 International
      10k001Updated Jul 22, 2019Jul 22, 2019
    • eMERGE FHIR Specification
      1000Updated Jul 9, 2019Jul 9, 2019
    • 0000Updated Jul 1, 2019Jul 1, 2019
    • Resources for internal training
      Jupyter Notebook
      MIT License
      0000Updated Sep 13, 2018Sep 13, 2018
    • fglob

      Public
      Process lists of glob patterns
      Python
      MIT License
      0000Updated May 22, 2018May 22, 2018
    • Python
      0000Updated Apr 16, 2018Apr 16, 2018
    • Internal scripts for working with DNAnexus
      Shell
      MIT License
      0000Updated Apr 10, 2018Apr 10, 2018
    • Bash steps to copy files into a collaborator's AWS S3 bucket
      0010Updated Dec 5, 2017Dec 5, 2017
    • bgzip_md5

      Public
      Script that combines tee, bgzip, and md5sum to efficiently checksum and compress files
      Python
      0000Updated Nov 30, 2017Nov 30, 2017
    • seneschal

      Public
      Seneschal is an automation system that serves as a restricted control interface between users and a protected environment.
      Python
      0000Updated Aug 3, 2017Aug 3, 2017
    • Python
      0000Updated Aug 3, 2017Aug 3, 2017
    • Process a batch of SNP and indel VCF files as read from an XLSX file
      Python
      0100Updated Jul 28, 2017Jul 28, 2017
    • relascope

      Public
      Records recursive measurements of filesystem directories
      Python
      MIT License
      0000Updated May 2, 2017May 2, 2017
    • This will be used to merge several spreadsheets for a storage report
      Python
      2100Updated Mar 20, 2017Mar 20, 2017