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    22 repositories

    • cbioportal_customization

      Public
      Images for the UCL-CI cBioportal instance
      Roff
      •0•0•0•0•Updated May 1, 2024May 1, 2024

    • LearnBioinformatics

      Public
      Compilation of resources to learn NGS data analysis
      0•2•0•0•Updated Jan 26, 2024Jan 26, 2024

    • Sarek_v2.2.1

      Public
      Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
      Nextflow
      •
      MIT License
      •412•0•0•0•Updated Jan 18, 2024Jan 18, 2024

    • rnaseq

      Public
      RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control
      HTML
      •
      MIT License
      •705•1•0•0•Updated Jan 18, 2024Jan 18, 2024

    • chipseq

      Public
      Chromatin immunoprecipitation (ChIP-seq) analysis using BWA and MACS2 with QC steps.
      R
      •
      MIT License
      •148•0•0•0•Updated Jan 18, 2024Jan 18, 2024

    • myriad-modulefiles

      Public
      Module files for BLIC's software on UCL Myriad HPC
      Tcl
      •
      MIT License
      •0•1•0•0•Updated Feb 15, 2023Feb 15, 2023

    • myriad-buildscripts

      Public
      Set of build scripts to install BLIC's software on UCL Myriad HPC
      C++
      •
      MIT License
      •0•0•0•0•Updated Feb 19, 2021Feb 19, 2021

    • nf-co.re

      Public
      Code and files for the main nf-core website >>>
      PHP
      •
      MIT License
      •195•0•0•0•Updated Mar 10, 2020Mar 10, 2020

    • legion-buildscripts

      Public
      Set of build scripts to install BLIC's software on UCL Legion HPC
      C++
      •
      MIT License
      •0•0•0•0•Updated Jan 21, 2020Jan 21, 2020

    • Sarek_v2.3.FIX1

      Public
      Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Nov 19, 2019Nov 19, 2019

    • legion-modulefiles

      Public
      Module files for BLIC's software on UCL Legion HPC
      Tcl
      •
      MIT License
      •0•0•0•0•Updated Oct 15, 2019Oct 15, 2019

    • MuPeXI

      Public
      MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.
      Python
      •
      Other
      •28•0•0•0•Updated Sep 12, 2019Sep 12, 2019

    • nf-ginkgo

      Public
      NextFlow pipeline for running Ginkgo
      Nextflow
      •
      MIT License
      •0•2•0•0•Updated Aug 24, 2019Aug 24, 2019

    • ginkgo

      Public
      Cloud-based single-cell copy-number variation analysis tool
      PHP
      •
      BSD 2-Clause "Simplified" License
      •28•0•0•0•Updated Aug 3, 2019Aug 3, 2019

    • tcga-ee

      Public
      TCGA Expression Explorer (shiny app)
      R
      •
      MIT License
      •1•3•0•0•Updated Dec 4, 2018Dec 4, 2018

    • standalone_scripts

      Public
      Repository to store standalone scripts that do not belong to any bigger package or repository
      Python
      •
      MIT License
      •23•0•0•0•Updated Nov 20, 2018Nov 20, 2018

    • crispr-parsr

      Public
      Software to parse and analyse deletions (and insertions) from a CRISPR resequencing experiment
      Perl
      •
      MIT License
      •0•1•0•0•Updated Nov 15, 2018Nov 15, 2018

    • methylseq

      Public
      Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
      Python
      •
      MIT License
      •145•0•0•0•Updated Nov 14, 2018Nov 14, 2018

    • Legion_toolkit

      Public
      General scripts which make life easier when working on the Legion cluster at UCL
      Perl
      •0•1•0•0•Updated Apr 19, 2018Apr 19, 2018

    • clusterflow

      Public
      A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
      Perl
      •
      GNU General Public License v3.0
      •27•0•0•0•Updated Oct 6, 2016Oct 6, 2016

    • ensembl-hive

      Public
      EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource
      HTML
      •28•0•0•0•Updated Aug 1, 2016Aug 1, 2016

    • FORGE2

      Public
      Perl
      •1•0•0•0•Updated Mar 17, 2016Mar 17, 2016