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    • TypeScript
      MIT License
      7614Updated Dec 23, 2024Dec 23, 2024
    • Holds documentation for Cytoscape Web
      Makefile
      Creative Commons Zero v1.0 Universal
      0001Updated Dec 19, 2024Dec 19, 2024
    • Graph theory (network) library for visualisation and analysis
      JavaScript
      MIT License
      1.6k10k124Updated Dec 18, 2024Dec 18, 2024
    • A wrapper for Popper.js that lets you position divs relative to Cytoscape elements
      JavaScript
      MIT License
      239901Updated Dec 18, 2024Dec 18, 2024
    • This repo tracks the work of data-driven addition of phosphorylation sites to proteins in networks (and pathways).
      R
      MIT License
      0030Updated Dec 9, 2024Dec 9, 2024
    • cx

      Public
      CX serialization and de-serialization in Cytoscape
      Java
      1281Updated Dec 9, 2024Dec 9, 2024
    • JavaScript
      MIT License
      01150Updated Dec 9, 2024Dec 9, 2024
    • Cytoscape 3 implementation bundles.
      Java
      GNU Lesser General Public License v2.1
      423600Updated Dec 5, 2024Dec 5, 2024
    • Markdown version of Cytoscape manual
      Creative Commons Zero v1.0 Universal
      231100Updated Dec 5, 2024Dec 5, 2024
    • Build and maintenance scripts for Cytoscape core developers.
      Jupyter Notebook
      5210Updated Dec 4, 2024Dec 4, 2024
    • Query figures indexed by PubMed Central and collect metadata
      R
      Creative Commons Zero v1.0 Universal
      4100Updated Dec 1, 2024Dec 1, 2024
    • (Experimental) Example apps for Cytoscape Web
      TypeScript
      MIT License
      0000Updated Nov 26, 2024Nov 26, 2024
    • The ELK layout algorithm adapter for Cytoscape.js
      JavaScript
      MIT License
      274500Updated Nov 26, 2024Nov 26, 2024
    • The Dagre layout for DAGs and trees for Cytoscape.js
      JavaScript
      MIT License
      8225510Updated Nov 22, 2024Nov 22, 2024
    • Context menu for Cytoscape.js
      JavaScript
      MIT License
      8316710Updated Nov 22, 2024Nov 22, 2024
    • The Cola.js physics simulation layout for Cytoscape.js
      JavaScript
      MIT License
      6615101Updated Nov 22, 2024Nov 22, 2024
    • Cytoscape org web site.
      HTML
      162210Updated Nov 21, 2024Nov 21, 2024
    • JavaScript
      MIT License
      1150Updated Nov 21, 2024Nov 21, 2024
    • Cytoscape 3 support bundles.
      Java
      5001Updated Nov 18, 2024Nov 18, 2024
    • Cytoscape 3.x parent pom file.
      5000Updated Nov 18, 2024Nov 18, 2024
    • Cytoscape 3 desktop version.
      Java
      181703Updated Nov 18, 2024Nov 18, 2024
    • cytoscape

      Public
      Cytoscape: an open source platform for network analysis and visualization
      Shell
      13958601Updated Nov 18, 2024Nov 18, 2024
    • Cytoscape 3 project files for App developers.
      4100Updated Nov 18, 2024Nov 18, 2024
    • Cytoscape 3 API bundles.
      Java
      GNU Lesser General Public License v2.1
      342200Updated Nov 18, 2024Nov 18, 2024
    • Python library for calling Cytoscape Automation via CyREST
      Python
      Other
      1572251Updated Nov 14, 2024Nov 14, 2024
    • The Klay layout algorithm for Cytoscape.js
      JavaScript
      MIT License
      418801Updated Nov 14, 2024Nov 14, 2024
    • PDF export extension for Cytoscape.js
      JavaScript
      MIT License
      0020Updated Nov 7, 2024Nov 7, 2024
    • Collection of modular Cytoscape tutorials for online presentation using reveal.js
      HTML
      Creative Commons Zero v1.0 Universal
      1183152613Updated Nov 7, 2024Nov 7, 2024
    • RCy3

      Public
      New version of RCy3, redesigned and collaboratively maintained by Cytoscape developer community
      R
      MIT License
      205270Updated Oct 30, 2024Oct 30, 2024
    • JavaScript library for calling Cytoscape Automation via CyREST
      JavaScript
      MIT License
      4310Updated Oct 29, 2024Oct 29, 2024