Repositories list

• brain_CTP_deconv

  Public
  Deconvolving brain cell-types from DNA methylation data

  HTML

  •0•1•0•0•Updated Oct 17, 2024Oct 17, 2024

• devBrain_xQTL

  Public
  Jupyter Notebook

  •1•7•0•0•Updated Aug 30, 2024Aug 30, 2024

• Dev_Brain_IsoSeq

  Public
  Bulk (CP/GZ) and single-cell Iso-Seq in the developing human brain

  HTML

  •2•7•1•0•Updated May 30, 2024May 30, 2024

• wf-single-cell

  Public
  Oxford Nanopore's single cell pipeline (successor to Sockeye) with enhancements for our cluster

  Python

  •

  Other

  •39•0•0•0•Updated Feb 9, 2024Feb 9, 2024

• ipsych_xdx_finemap

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jan 30, 2024Jan 30, 2024

• ASD_STG_LCM_RNAseq

  Public
  RNA-seq of laser captured neuron and oligos in ASD superior temporal gyrus

  R

  •0•3•0•0•Updated Aug 21, 2023Aug 21, 2023

• gene-list

  Public
  📚List of curated gene sets for enrichment analyses

  1•1•3•0•Updated May 12, 2023May 12, 2023

• C4A-network

  Public
  Code accompanying the manuscript "Brain gene co-expression networks link complement signaling with convergent synaptic pathology in schizophrenia"

  gwasrna-seqco-expression+ 1schizophrenia

  R

  •1•4•0•0•Updated Jan 13, 2023Jan 13, 2023

• h2-snakemake-experimental

  Public
  Snakemake profile for Hoffman2

  Python

  •10•0•0•0•Updated May 3, 2022May 3, 2022

• GENCODE-EDA

  Public
  Exploratory data analysis for GENCODE annotation in Julia or R

  rna-seqgencode

  Julia

  •0•0•1•0•Updated Jan 28, 2022Jan 28, 2022

• BrainSpan-trajectory

  Public
  Code that downloads, munges, and plots developmental gene expression data from BrainSpan

  rna-seq

  Jupyter Notebook

  •2•4•1•0•Updated Feb 6, 2021Feb 6, 2021

• NHP_MIA_RNAseq

  Public
  Code and documentation for NHP_MIA_RNAseq project

  Shell

  •0•1•0•0•Updated Jan 19, 2018Jan 19, 2018