Repositories list

• MetaXcan

  Public
  MetaXcan software and manuscript

  Python

  •

  Other

  •92•145•66•3•Updated Oct 31, 2024Oct 31, 2024

• rat_genomics_paper_pipeline_2024

  Public
  https://hakyimlab.github.io/rat_genomics_paper_pipeline_2024/

  Python

  •0•1•0•0•Updated Oct 26, 2024Oct 26, 2024

• TFPred-snakemake

  Public
  HTML

  •0•0•0•0•Updated Oct 2, 2024Oct 2, 2024

• web-lab-notes-quarto

  Public
  https://lab-notes.hakyimlab.org

  HTML

  •

  Other

  •0•1•0•0•Updated Aug 30, 2024Aug 30, 2024

• scPrediXcan

  Public
  HTML

  •

  MIT License

  •0•1•0•0•Updated Aug 12, 2024Aug 12, 2024

• sabrina-deep-learning-in-genomics

  Public
  https://sabrina-dl.hakyimlab.org

  Jupyter Notebook

  •0•0•0•0•Updated Aug 9, 2024Aug 9, 2024

• web-course-material

  Public
  https://course-material.hakyimlab.org

  HTML

  •

  Other

  •0•0•0•0•Updated Jun 26, 2024Jun 26, 2024

• 2024_T32_GME_Annual_Hackathon

  Public
  Github repo for the Genetic Mechanisms and Evolution Training Grant 2024 annual hackathon

  HTML

  •10•0•0•0•Updated Jun 22, 2024Jun 22, 2024

• Rat_Genomics_Paper_Pipeline

  Public
  R

  •0•1•0•0•Updated Feb 29, 2024Feb 29, 2024

• PredictDb-nextflow

  Public
  R

  •4•2•2•0•Updated Feb 27, 2024Feb 27, 2024

• HGEN471-class

  Public
  A repository for all things related to the Winter course, HGEN471

  HTML

  •2•5•0•0•Updated Feb 23, 2024Feb 23, 2024

• PredictDB-Tutorial

  Public
  Tutorial for running the PredictDB pipeline with GEUVADIS data

  R

  •11•9•6•1•Updated Jan 22, 2024Jan 22, 2024

• brainxcan

  Public
  Python

  •

  MIT License

  •4•8•2•0•Updated Nov 19, 2023Nov 19, 2023

• nn-zero-to-hero

  Public
  Neural Networks: Zero to Hero

  Jupyter Notebook

  •

  MIT License

  •1.5k•1•0•0•Updated Jun 30, 2023Jun 30, 2023

• deep-learning-genomics

  Public
  Summer immersion syllabus in deep learning in genomics

  MIT License

  •1•1•0•0•Updated Jun 30, 2023Jun 30, 2023

• archived-web-lab-notes

  Public
  https://archived-web-lab-notes.hakyimlab.org

  HTML

  •0•0•0•0•Updated Jun 1, 2023Jun 1, 2023

• brainxcan-docs

  Public
  HTML

  •1•0•0•0•Updated Apr 17, 2023Apr 17, 2023

• PredictDB_Pipeline_GTEx_v7

  Public
  PredictDB Pipeline for GTEx v7 data

  R

  •9•18•2•0•Updated Nov 9, 2022Nov 9, 2022

• PrediXcan

  Public
  PrediXcan Project

  Python

  •

  MIT License

  •83•106•1•1•Updated Oct 17, 2022Oct 17, 2022

• RatXcan_Training

  Public
  https://sabrina-mi.github.io/RatXcan_Training/

  Python

  •1•0•0•0•Updated Sep 3, 2022Sep 3, 2022

• web-homepage

  Public
  HTML

  •1•2•1•0•Updated Jul 28, 2022Jul 28, 2022

• Yanyus-misc-tools

  Public
  A scripting gallery containing random this and that.

  Python

  •

  MIT License

  •5•0•0•0•Updated Jul 22, 2022Jul 22, 2022

• psychencode

  Public
  https://hakyimlab.github.io/psychencode/

  R

  •3•5•2•0•Updated Jun 17, 2022Jun 17, 2022

• Training

  Public
  TeX

  •

  MIT License

  •9•8•0•0•Updated Mar 7, 2022Mar 7, 2022

• rat-genomic-analysis

  Public
  https://hakyimlab.github.io/rat-genomic-analysis/

  HTML

  •1•2•0•0•Updated Nov 30, 2021Nov 30, 2021

• enformer-pytorch

  Public
  Python

  •

  MIT License

  •3•0•0•0•Updated Nov 19, 2021Nov 19, 2021

• ptrs-tf

  Public
  Building PTRS model using TensorFlow

  Jupyter Notebook

  •

  MIT License

  •4•0•0•0•Updated Nov 18, 2021Nov 18, 2021

• ptrs-ukb

  Public
  Calculate PTRS for UKB data

  HTML

  •

  MIT License

  •3•0•0•0•Updated Nov 18, 2021Nov 18, 2021

• gtex-gwas-analysis

  Public
  Shell

  •

  MIT License

  •5•21•2•0•Updated Aug 6, 2021Aug 6, 2021

• Hands-on-Training

  Public
  https://hakyimlab.github.io/Hands-on-Training/

  R

  •3•0•0•0•Updated Jul 30, 2021Jul 30, 2021