Repositories list

• statphys_2024

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Nov 8, 2024Nov 8, 2024

• mm_hse_2024

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

• histonedb

  Public
  Jupyter Notebook

  •10•2•4•0•Updated Nov 5, 2024Nov 5, 2024

• theses

  Public
  Bachelor, Master, PHD theses from members of IntBio Group

  0•0•0•0•Updated Nov 3, 2024Nov 3, 2024

• 2024_Druzhkova_et_al

  Public
  MD simulations of TRAIL-based systems

  Creative Commons Attribution Share Alike 4.0 International

  •0•0•0•0•Updated Nov 3, 2024Nov 3, 2024

• Kosarim_et_al_2024

  Public
  0•0•0•0•Updated Nov 3, 2024Nov 3, 2024

• intbio.github.io

  Public
  SCSS

  •1•0•0•0•Updated Nov 2, 2024Nov 2, 2024

• SimChrom

  Public
  JavaScript

  •0•0•0•0•Updated Nov 1, 2024Nov 1, 2024

• gromacs_ff

  Public
  Trusted force field files for gromacs

  Rich Text Format

  •13•39•5•1•Updated Oct 31, 2024Oct 31, 2024

• Kovalev_et_al_2024

  Public
  JavaScript

  •0•0•0•0•Updated Oct 29, 2024Oct 29, 2024

• hist_gene_prot

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Oct 18, 2024Oct 18, 2024

• spb_2024

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Oct 2, 2024Oct 2, 2024

• PyNAMod

  Public
  The aim of this project is to provide a set of python tools to perform modelling of various DNA structures

  Python

  •

  GNU General Public License v3.0

  •1•1•0•0•Updated Oct 1, 2024Oct 1, 2024

• pymolint

  Public
  A python package to characterise molecular interactions at atomic level in PDB structures and MD simulations

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Sep 23, 2024Sep 23, 2024

• Fedulova_et_al_2024

  Public template
  JavaScript

  •0•0•0•0•Updated Sep 13, 2024Sep 13, 2024

• 2024_chromprot

  Public
  JavaScript

  •0•0•0•0•Updated Jul 25, 2024Jul 25, 2024

• gmx_protocols

  Public
  Protocols for running MD simulations in Gromacs

  4•9•0•0•Updated Jun 18, 2024Jun 18, 2024

• Tetrasome_MD_2024

  Public
  HTML

  •

  Creative Commons Attribution Share Alike 4.0 International

  •0•0•0•0•Updated Jun 4, 2024Jun 4, 2024

• 2022_synbio_webapp

  Public
  Jupyter Notebook

  •0•1•0•0•Updated May 24, 2024May 24, 2024

• grant_2023_RNFmoluch

  Public
  Мультимасштабное моделирование нуклеосомной структуры хроматина как ключ к пониманию работы геномов эукариот

  JavaScript

  •0•0•0•0•Updated May 15, 2024May 15, 2024

• seqplot

  Public
  Making plots with x-axis annotated with an image of a protein/DNA sequence or MSA

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •1•1•0•0•Updated May 4, 2024May 4, 2024

• mm_2024

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Apr 24, 2024Apr 24, 2024

• 2024_chromatin_sirius

  Public
  Makefile

  •0•0•0•0•Updated Apr 13, 2024Apr 13, 2024

• mm_hse_2023

  Public template
  Jupyter Notebook

  •1•0•0•0•Updated Feb 19, 2024Feb 19, 2024

• RNF_19-74-30003

  Public
  HTML

  •0•0•0•0•Updated Nov 20, 2023Nov 20, 2023

• spb_2023

  Public template
  Jupyter Notebook

  •0•0•0•0•Updated Oct 4, 2023Oct 4, 2023

• DrSciThesis

  Public
  TeX

  •

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Sep 27, 2023Sep 27, 2023

• Oleinikov_et_al_2023

  Public
  Supplementary material

  Creative Commons Attribution Share Alike 4.0 International

  •0•0•0•0•Updated Sep 23, 2023Sep 23, 2023

• grant_2018_RNFmoluch

  Public
  Jupyter Notebook

  •0•1•9•0•Updated May 5, 2023May 5, 2023

• gmx_template_for_nmr

  Public
  Workflow template for MD preparation and production

  Jupyter Notebook

  •0•0•0•0•Updated Apr 25, 2023Apr 25, 2023