Repositories list

• MMIVActivities

  Public
  Activities of the MMIV center

  TeX

  •9•4•2•1•Updated Nov 13, 2024Nov 13, 2024

• check4mmps

  Public
  Verify DICOM files for a possible use in GEMRIC

  CSS

  •0•0•1•0•Updated Oct 31, 2024Oct 31, 2024

• wsi2fiona

  Public
  Automation for importing whole-slide-images into research PACS

  Python

  •0•1•0•0•Updated Oct 9, 2024Oct 9, 2024

• Research-Information-System

  Public
  How to setup a research information system with PACS and RIS components

  Go

  •

  GNU General Public License v3.0

  •1•9•4•6•Updated Sep 3, 2024Sep 3, 2024

• ECTinfo

  Public
  0•0•0•0•Updated May 21, 2024May 21, 2024

• pr2mask

  Public
  Presentation state objects to .nii

  C++

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Apr 28, 2024Apr 28, 2024

• DICOMAnonymizer

  Public
  A multi-threaded anonymizer for DICOM files implementing most of DICOM PS 3.15 AnnexE

  C++

  •

  The Unlicense

  •0•13•6•0•Updated Mar 22, 2024Mar 22, 2024

• pyFiona

  Public
  Upload local dicom data to Fiona using python

  Python

  •0•0•0•0•Updated May 15, 2023May 15, 2023

• pseudonymize_whole_slide_images

  Public
  Converts a whole slice image into a DICOM structure and rewrites the barcode

  Dockerfile

  •0•0•0•0•Updated Jan 4, 2023Jan 4, 2023

• SpatialNavigationScoring

  Public
  Simple scoring website for analyzing log files from a spatial navigation task

  JavaScript

  •0•0•0•0•Updated Nov 4, 2022Nov 4, 2022

• human-mouse-hybrids

  Public
  Visualizing proteomics data

  JavaScript

  •0•0•0•0•Updated Sep 24, 2022Sep 24, 2022

• visual-studio-code-select

  Public
  TypeScript

  •

  MIT License

  •0•0•0•0•Updated Jul 30, 2022Jul 30, 2022

• fake-cells

  Public
  Cell separation demo using de-novo data

  Jupyter Notebook

  •0•0•0•0•Updated Mar 16, 2022Mar 16, 2022

• RegisterMRIDataForDeepLearning

  Public
  FSL registration of examples volumes for deep learning

  Shell

  •0•0•0•0•Updated Feb 25, 2022Feb 25, 2022

• ROR-MRIQC

  Public
  Integration of MRIQC into the research information system Helse Vest

  0•0•0•0•Updated Feb 17, 2022Feb 17, 2022

• DICOM-workflows

  Public
  A project to collection information on how to work with DICOM data in Matlab and python

  0•2•0•0•Updated Feb 12, 2022Feb 12, 2022

• LungSegmentation

  Public
  Basic lung segmentation from chest CT

  C++

  •2•6•0•0•Updated Feb 10, 2022Feb 10, 2022

• paintobrain

  Public
  Paint A Brain Project

  JavaScript

  •0•0•3•0•Updated Dec 9, 2021Dec 9, 2021

• CopyPETHeader

  Public
  A short DICOM toy example

  Shell

  •0•0•0•0•Updated Dec 8, 2021Dec 8, 2021

• BiolabSampleProject

  Public
  JavaScript

  •0•0•0•0•Updated Jul 12, 2021Jul 12, 2021

• RewritePixel

  Public
  Anonymize DICOM image data by detecting text and replacing it with black squares

  C++

  •1•4•0•0•Updated May 24, 2021May 24, 2021

• filter_dicom_by_tag

  Public
  Read DICOM files from local directory and filter them based on AI applied to the DICOM tags

  C++

  •1•2•2•0•Updated Jan 22, 2021Jan 22, 2021

• hallway-kiosk

  Public
  Basic setup for the hallway kiosk that accepts image files from slack channel

  Python

  •0•0•1•0•Updated Nov 2, 2020Nov 2, 2020

• gen-id

  Public
  Generate identifiers for research projects following regular expression pattern

  Python

  •0•0•0•0•Updated Sep 18, 2020Sep 18, 2020

• spectramosaic-public

  Public
  Visualization tool for interactive exploration of magnetic resonance spectroscopy ratios

  JavaScript

  •1•0•0•0•Updated Jun 29, 2020Jun 29, 2020

• LesionProject

  Public
  Source code for the brain lesion detection project

  C++

  •0•1•0•0•Updated May 14, 2020May 14, 2020

• deboning

  Public
  Remove bone tissue from plane-film X-Ray images trained with digitally reconstructed radiographs

  Python

  •1•3•0•0•Updated Apr 1, 2020Apr 1, 2020

• HeatEquation

  Public
  Simulates the heat equation given a label file. Generates a temperature and a gradient field.

  C++

  •0•2•0•0•Updated Feb 4, 2020Feb 4, 2020

• RISAttach

  Public
  A sub-project to upload arbitray data to the research PACS

  CSS

  •0•0•0•0•Updated Jan 27, 2020Jan 27, 2020

• estimate_gender_from_age

  Public
  A somewhat non-sensical R notebook to estimate gender given site, intra-cranial volume and age

  0•0•0•0•Updated Nov 15, 2019Nov 15, 2019