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    111 repositories

    • 2024-October-Introduction-to-R-for-Bioinformatics

      Public
      An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.
      HTML
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      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Oct 14, 2024Oct 14, 2024

    • 2024-September-Introduction-to-the-Command-Line-for-Bioinformatics

      Public
      An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.
      CSS
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      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Sep 21, 2024Sep 21, 2024

    • limma-proteomics-August-2024

      Public
      CSS
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      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Aug 28, 2024Aug 28, 2024

    • limma-proteomics-analysis-August-2024

      Public
      0•0•0•0•Updated Aug 27, 2024Aug 27, 2024

    • 2024-July-Introduction-to-R-for-Bioinformatics

      Public
      An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•0•Updated Jul 20, 2024Jul 20, 2024

    • 2024-June-RNA-Seq-Analysis

      Public
      HTML
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      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Jun 28, 2024Jun 28, 2024

    • 2024-June-Advanced-Topics-in-Single-Cell-RNA-Seq-Multiome

      Public
      HTML
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      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Jun 13, 2024Jun 13, 2024

    • 2024-June-Single-Cell-RNA-Seq-Analysis

      Public
      HTML
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      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Jun 13, 2024Jun 13, 2024

    • 2024-June-Introduction-to-the-Command-Line-for-Bioinformatics

      Public
      An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.
      CSS
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      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jun 8, 2024Jun 8, 2024

    • 2024-April-Introduction-To-Python-For-Bioinformatics

      Public
      This workshop consists of five half-day sessions, combining lecture and exercises to teach you the basics of programming (using python), with an emphasis on bioinformatics. Completion of this material will allow participants to get the most out of our other experiment-centric workshops. No previous python experience is necessary.
      CSS
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      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated May 4, 2024May 4, 2024

    • 2024-March-Introduction-to-R-for-Bioinformatics

      Public
      An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.
      CSS
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Mar 16, 2024Mar 16, 2024

    • 2024-March-Introduction-to-the-Command-Line-for-Bioinformatics

      Public
      An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.
      CSS
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Mar 9, 2024Mar 9, 2024

    • 2023-December-Spatial

      Public
      A one-day exploration of spatial transcriptomics
      HTML
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      GNU General Public License v3.0
      •0•1•0•0•Updated Mar 8, 2024Mar 8, 2024

    • ucdavis-bioinformatics-training.github.io

      Public
      CSS
      •0•5•0•0•Updated Dec 21, 2023Dec 21, 2023

    • 2023-December-Single-Cell-RNA-Seq-Analysis

      Public
      A three day hands-on workshop for researchers interested in single cell RNA-Seq
      HTML
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      Creative Commons Zero v1.0 Universal
      •0•3•0•0•Updated Dec 13, 2023Dec 13, 2023

    • 2023-Dec-Introduction-To-Python-For-Bioinformatics

      Public
      This workshop consists of five half-day sessions, combining lecture and exercises to teach you the basics of programming (using python), with an emphasis on bioinformatics. Completion of this material will allow participants to get the most out of our other experiment-centric workshops. No previous python experience is necessary.
      CSS
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Dec 11, 2023Dec 11, 2023

    • 2023-Oct-Introduction-to-R-for-Bioinformatics

      Public
      An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.
      CSS
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Nov 4, 2023Nov 4, 2023

    • 2023-October-Slurm-Seminar

      Public
      A one and half hour seminar on how to use slurm on a cluster.
      CSS
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      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Oct 2, 2023Oct 2, 2023

    • 2023-September-Introduction-to-the-Command-Line-for-Bioinformatics

      Public
      An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.
      CSS
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Sep 16, 2023Sep 16, 2023

    • 2023-June-Single-Cell-RNA-Seq-Analysis

      Public
      HTML
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      Creative Commons Zero v1.0 Universal
      •0•2•0•0•Updated Jul 28, 2023Jul 28, 2023

    • 2023-July-Introduction-To-Python-For-Bioinformatics

      Public
      This workshop consists of five half-day sessions, combining lecture and exercises to teach you the basics of programming (using python), with an emphasis on bioinformatics. Completion of this material will allow participants to get the most out of our other experiment-centric workshops. No previous python experience is necessary.
      CSS
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jul 14, 2023Jul 14, 2023

    • 2023-June-RNA-Seq-Analysis

      Public
      HTML
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      Creative Commons Zero v1.0 Universal
      •0•2•0•0•Updated Jun 30, 2023Jun 30, 2023

    • 2023-June-Advanced-Topics-in-Single-Cell-RNA-Seq-VDJ

      Public
      A one-day exploration of a 10x V(D)J experiment for researchers with some knowledge of scRNA-seq experiments
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Jun 28, 2023Jun 28, 2023

    • 2023-June-Introduction-to-R-for-Bioinformatics

      Public
      An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.
      CSS
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Jun 13, 2023Jun 13, 2023

    • 2023-May-Introduction-to-the-Command-Line-for-Bioinformatics

      Public
      An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.
      CSS
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•0•0•Updated May 21, 2023May 21, 2023

    • 2020-mRNA_Seq_Workshop

      Public
      Focused multi-day workshop covering the material needed for a successful RNA-Seq experiment.
      HTML
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      Creative Commons Zero v1.0 Universal
      •6•4•1•3•Updated Apr 12, 2023Apr 12, 2023

    • 2020-Bioinformatics_Prerequisites_Workshop

      Public
      An introduction to the basics of bioinformatics for biologists. No data analysis experience necessary.
      bioinformatics
      HTML
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      BSD 3-Clause "New" or "Revised" License
      •3•1•0•2•Updated Apr 12, 2023Apr 12, 2023

    • 2020-Variant_Analysis_Workshop

      Public
      From SNP and structural variant calling to GWAS. Workshop cancelled due to public health concerns.
      CSS
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      BSD 3-Clause "New" or "Revised" License
      •2•2•0•2•Updated Apr 12, 2023Apr 12, 2023

    • 2020-Intro_Single_Cell_RNA_Seq

      Public
      A workshop for biologists preparing to run their first single-cell RNA Seq experiment. No prior experience in bioinformatics necessary.
      HTML
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      Creative Commons Zero v1.0 Universal
      •8•5•1•3•Updated Apr 12, 2023Apr 12, 2023

    • 2020-Advanced_Single_Cell_RNA_Seq

      Public
      Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory analysis. Instruction in introductory analysis will not be provided.
      Gnuplot
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      Creative Commons Zero v1.0 Universal
      •13•12•1•3•Updated Apr 12, 2023Apr 12, 2023