Repositories list

• wes-qc

  Public
  Sample and variant QC for exome cohort studies

  Jupyter Notebook

  •0•2•0•1•Updated Nov 10, 2024Nov 10, 2024

• spack-repo

  Public
  Spack Package Repository

  Python

  •

  MIT License

  •3•1•0•0•Updated Nov 8, 2024Nov 8, 2024

• ibackup

  Public
  Performant backups of many files to iRODS

  Go

  •

  MIT License

  •0•0•0•3•Updated Nov 8, 2024Nov 8, 2024

• yascp

  Public
  scRNA multimodal analysis pipeline utilised for large dataset processing

  scrna-seq-analysis

  Python

  •

  GNU General Public License v3.0

  •7•14•0•1•Updated Nov 8, 2024Nov 8, 2024

• softpack-core

  Public
  SoftPack Core

  Python

  •

  MIT License

  •0•0•1•1•Updated Nov 8, 2024Nov 8, 2024

• softpack-web

  Public
  Softpack Web provides a graphical user interface for Softpack services.

  reactgraphql

  TypeScript

  •

  MIT License

  •0•0•5•6•Updated Nov 8, 2024Nov 8, 2024

• wrstat-ui

  Public
  Go

  •

  MIT License

  •0•0•0•1•Updated Nov 8, 2024Nov 8, 2024

• nf_longread

  Public
  nextflow pipeline for long read processing

  Python

  •

  MIT License

  •0•0•0•0•Updated Nov 7, 2024Nov 7, 2024

• MAVEQC

  Public
  R

  •

  MIT License

  •1•0•0•0•Updated Nov 6, 2024Nov 6, 2024

• softpack-docs

  Public
  SoftPack Documentation

  JavaScript

  •0•0•5•12•Updated Nov 5, 2024Nov 5, 2024

• QTLight

  Public
  eqtl analysis pipeline using tensorqtl

  Python

  •

  GNU General Public License v3.0

  •5•6•0•0•Updated Nov 1, 2024Nov 1, 2024

• osdataproc

  Public
  osdataproc is a command-line tool for creating an OpenStack cluster with Apache Spark and Apache Hadoop configured. It comes with JupyterLab and Hail, a genomic data analysis library built on Spark installed, as well as Netdata for monitoring.

  Jinja

  •

  Other

  •3•0•0•0•Updated Oct 25, 2024Oct 25, 2024

• go-softpack-builder

  Public
  Go implementation of a softpack builder service

  Go

  •

  MIT License

  •0•0•0•0•Updated Oct 25, 2024Oct 25, 2024

• go-softpack-analytics

  Public
  Go

  •

  MIT License

  •0•0•0•0•Updated Oct 24, 2024Oct 24, 2024

• conda-audited

  Public
  Wrapper script to and audit and configure miniconda and micromamba

  MIT License

  •0•0•0•0•Updated Oct 23, 2024Oct 23, 2024

• farmers-report

  Public
  Weekly report for farm usage

  R

  •0•0•0•1•Updated Oct 23, 2024Oct 23, 2024

• coloc-flow

  Public
  Nextflow

  •1•3•0•0•Updated Oct 20, 2024Oct 20, 2024

• sarek

  Public
  Nextflow

  •

  MIT License

  •3•0•0•1•Updated Oct 18, 2024Oct 18, 2024

• softpackdef

  Public
  Go

  •0•0•0•0•Updated Oct 14, 2024Oct 14, 2024

• admixture-from-glimpse

  Public
  Run admixture on GLIMPSE imputed genotypes to predict sample populations

  Nextflow

  •0•0•0•0•Updated Oct 14, 2024Oct 14, 2024

• mercuryrc

  Public
  Shell

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Oct 11, 2024Oct 11, 2024

• go-farmer

  Public
  Go

  •

  MIT License

  •0•0•0•0•Updated Oct 10, 2024Oct 10, 2024

• glimpse-nextflow

  Public
  Nextflow

  •0•0•0•0•Updated Sep 17, 2024Sep 17, 2024

• softpack-builder

  Public
  SoftPack Builder provides services for building SoftPack environments

  Python

  •

  MIT License

  •0•0•1•12•Updated Sep 16, 2024Sep 16, 2024

• addRStudio

  Public
  Add rstudio server files to an existing singularity image.

  Shell

  •0•0•0•0•Updated Sep 13, 2024Sep 13, 2024

• wtsi-hgi.github.io

  Public
  Github webpage for HGI projects

  HTML

  •0•0•0•0•Updated Sep 10, 2024Sep 10, 2024

• dir2singularity

  Public
  Go

  •0•0•0•0•Updated Sep 9, 2024Sep 9, 2024

• uber-recipe-creator

  Public
  Go

  •0•0•0•0•Updated Aug 21, 2024Aug 21, 2024

• nf_tower_irods_to_lustre

  Public
  Nextflow

  •

  GNU General Public License v3.0

  •1•0•1•0•Updated Aug 16, 2024Aug 16, 2024

• r-spack-recipe-builder

  Public
  Spack recipe creator for R packages in CRAN and Bioconductor used to build up the ubeR module for use in farm22

  Python

  •0•0•0•0•Updated Aug 9, 2024Aug 9, 2024