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first attempts at writing the serializers for the new types PhylogeneticModel and GroupBasedPhylogeneticModel #4010

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first attempts at writing the serializers for the new types PhylogeneticModel and GroupBasedPhylogeneticModel #4010

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Commits on Aug 13, 2024

  1. first attempts at writing the serializers for the new types Phylogene… 

    …ticModel and GroupBasedPhylogeneticModel
    @mariusneu
    mariusneu committed Aug 13, 2024
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Commits on Aug 14, 2024

  1. include serialization functions from AlgebraicStatistics

    @antonydellavecchia
    antonydellavecchia committed Aug 14, 2024
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Commits on Aug 16, 2024

  1. Removed used_params for both types, save_object uses functions instea… 

    …d of properties now
    @mariusneu
    mariusneu committed Aug 16, 2024
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  2. Added functions to serialize edges of graphs

    @mariusneu
    mariusneu committed Aug 16, 2024
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  3. Changed indentation from 4 to 2

    @mariusneu
    mariusneu committed Aug 16, 2024
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  4. Apply suggestions from code review: Save all polynomial rings as type… 

    …d object

Co-authored-by: antonydellavecchia <[email protected]>
    @mariusneu @antonydellavecchia
    mariusneu and antonydellavecchia authored Aug 16, 2024
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  5. Changed tpye of root_distribution to Vector. Dirty workaround to allo… 

    …w loading
    @mariusneu
    mariusneu committed Aug 16, 2024
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  6. Resolved conflicts

    @mariusneu
    mariusneu committed Aug 16, 2024
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Commits on Aug 21, 2024

  1. Changed serialization of Edges to a more efficient way

    @mariusneu
    mariusneu committed Aug 21, 2024
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  2. saving loading working

    @antonydellavecchia
    antonydellavecchia committed Aug 21, 2024
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Commits on Sep 6, 2024

  1. Some more changes in the serialization file as well as in the seriali… 

    …zation of dicts to catch the case where the key is not serialized with params
    @mariusneu
    mariusneu committed Sep 6, 2024
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Commits on Sep 9, 2024

  1. jukes cantor model saving and loading

    @antonydellavecchia
    antonydellavecchia committed Sep 9, 2024
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  2. Changed documentation, removed unneccessary comments

    @mariusneu
    mariusneu committed Sep 9, 2024
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Commits on Sep 19, 2024

  1. Wrote first mini test

    @mariusneu
    mariusneu committed Sep 19, 2024
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Commits on Sep 20, 2024

  1. Wrote tests to verify serialization on object-identity level

    @mariusneu
    mariusneu committed Sep 20, 2024
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Commits on Sep 27, 2024

  1. Changed type of root_distribution entries to QQ in all models. Made t… 

    …ests more elaborate. Changed testing for graphs so that false negatives are avoided.
    @mariusneu
    mariusneu committed Sep 27, 2024
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