bump diamond dependency to v2.1.10

oschwengers · Oct 30, 2024 · 7aa9f16 · 7aa9f16
1 parent fb306ab
commit 7aa9f16
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/bakta/utils.py b/bakta/utils.py
@@ -44,7 +44,7 @@ def print_version(self):
 DEPENDENCY_PILERCR = (Version(1, 6), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'PilerCR', ('pilercr', '-options'), ['--skip-crispr'])
 DEPENDENCY_PYRODIGAL = (Version(3, 1, 0), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'Pyrodigal', (sys.executable, '-c', 'import pyrodigal; print(pyrodigal.__version__)'), ['--skip-cds'])
 DEPENDENCY_PYHMMER = (Version(0, 10, 4), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'Pyhmmer', (sys.executable, '-c', 'import pyhmmer; print(pyhmmer.__version__)'), ['--skip-cds', '--skip-sorf'])
-DEPENDENCY_DIAMOND = (Version(2, 1, 8), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'Diamond', ('diamond', 'help'), ['--skip-cds', '--skip-sorf'])
+DEPENDENCY_DIAMOND = (Version(2, 1, 10), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'Diamond', ('diamond', 'help'), ['--skip-cds', '--skip-sorf'])
 DEPENDENCY_DEEPSIG = (Version(1, 2, 5), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'DeepSig', ('deepsig', '--version'), ['--gram ?'])
 DEPENDENCY_BLASTN = (Version(2, 14, 0), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'Blastn', ('blastn', '-version'), ['--skip-ori'])
 DEPENDENCY_AMRFINDERPLUS = (Version(3, 11, 26), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'AMRFinderPlus', ('amrfinder', '--version'), ['--skip-cds'])

diff --git a/environment.yml b/environment.yml
@@ -15,7 +15,7 @@ dependencies:
   - infernal>=1.1.4
   - piler-cr
   - pyhmmer>=0.10.15
-  - diamond==2.1.8
+  - diamond>=2.1.10
   - blast>=2.14.0
   - ncbi-amrfinderplus>=3.11.26
   - circos>=0.69.8