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update readme
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oschwengers committed Oct 18, 2021
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Expand Up @@ -101,13 +101,13 @@ Bacta requires the following 3rd party executables which must be installed & exe

- tRNAscan-SE (2.0.6) <https://doi.org/10.1101/614032> <http://lowelab.ucsc.edu/tRNAscan-SE>
- Aragorn (1.2.38) <http://dx.doi.org/10.1093/nar/gkh152> <http://130.235.244.92/ARAGORN>
- INFERNAL (1.1.2) <https://dx.doi.org/10.1093%2Fbioinformatics%2Fbtt509> <http://eddylab.org/infernal>
- INFERNAL (1.1.4) <https://dx.doi.org/10.1093%2Fbioinformatics%2Fbtt509> <http://eddylab.org/infernal>
- PILER-CR (1.06) <https://doi.org/10.1186/1471-2105-8-18> <http://www.drive5.com/pilercr>
- Prodigal (2.6.3) <https://dx.doi.org/10.1186%2F1471-2105-11-119> <https://github.com/hyattpd/Prodigal>
- Hmmer (3.3.1) <https://doi.org/10.1093/nar/gkt263> <http://hmmer.org>
- Diamond (2.0.6) <https://doi.org/10.1038/nmeth.3176> <https://github.com/bbuchfink/diamond>
- Diamond (2.0.11) <https://doi.org/10.1038/nmeth.3176> <https://github.com/bbuchfink/diamond>
- Blast+ (2.7.1) <https://www.ncbi.nlm.nih.gov/pubmed/2231712> <https://blast.ncbi.nlm.nih.gov>
- AMRFinderPlus (3.10.1) <https://github.com/ncbi/amr>
- AMRFinderPlus (3.10.16) <https://github.com/ncbi/amr>

On Ubuntu/Debian/Mint you can install these via:

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