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Introduce feature inference TSV output file #331

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merged 10 commits into from
Oct 9, 2024
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As suggested in #314 , Bakta now internally stores all possible inference scores, i.e. bitsore, evalue, query coverage, subject coverage and sequence identity to.

As an extra level of assurance, we added a new TSV file *.inference.tsv containing this information with the following columns:

contig-id  feat-type  start  stop  strand  locus-tag  score  evalue  query-cov  subject-cov  identity

@oschwengers oschwengers added this to the v1.10.0 milestone Sep 27, 2024
@oschwengers oschwengers linked an issue Oct 2, 2024 that may be closed by this pull request
@oschwengers oschwengers merged commit ffacde1 into main Oct 9, 2024
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@oschwengers oschwengers deleted the feature-inference-tsv branch October 9, 2024 14:16
oschwengers added a commit that referenced this pull request Oct 30, 2024
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option to include scores in bakta output
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