v1.2.0 - User provided proteins arrived ...

This is the second minor release (v1.2.0) introducing user provided proteins as well as many improvements.

Compatible database scheme version: 3 v3.0

New features:

• introduce --proteins accepting a user provided set of trusted protein sequences: 992d929 1541f10 691646d (Thanks to @Tonny-zhou)

Improvements:

• revise Dbxrefs for UniParc & UniRef: 02b5dc8
• revise truncated dnaA/repA genes on rotated replicon sequences: 0c4ad10 (Thanks to Jochen Blom)
• assign locus tags to gene features only: c1e1c05
• extract nt seqs for ncrna-regions: f77e308
• generate unique feature IDs used as ID in GFF3: df32038
• add products to oriC/oriV/oriT features: 2eabd93
• reduce numbers of similar to aa sequence inference qualifiers in INSDC outputs to 1: 16401da
• improve and fix CWL file: 6776ca7 1d18e77 5c80d15
• exrtact & store Pfam HMM hits on hypothetical proteins: 2ba985a