Code accompanying Implications of TP53 Allelic State for Genome Stability, Clinical Presentation and Outcomes in Myelodysplastic Syndromes
Bernard E, Nannya Y, Hasserjian RP, et al., Nature Medicine, 26, 1549-1556, 2020.
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data/
: the folder contains the clinical and molecular data necessary to reproduce the results of the study. See the README in thedata/
folder for details about data structure. -
MDS-TP53-state.ipynb: the jupyter notebook with R code to reproduce results and figures.
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MDS-TP53-state.html: an html version of the notebook.
To clone this repository on your local computer please run:
$ git clone https://github.com/papaemmelab/MDS-TP53-state
# run in an R console
install.packages('ggplot2', repos = 'http://cran.us.r-project.org')
install.packages('reshape2', repos = 'http://cran.us.r-project.org')
install.packages('survival', repos = 'http://cran.us.r-project.org')
install.packages('survminer', repos = 'http://cran.us.r-project.org')
install.packages('cmprsk', repos = 'http://cran.us.r-project.org')
install.packages('stringr', repos = 'http://cran.us.r-project.org')
If any question on the repo, feel free to contact Elsa.