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Restructure amount
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* Created a quantitative branch.
* Moved amount under this.
* Made concentration a child of amount.
* Removed reciprocal relation to ‘has number of’.
* Make has number of a child of amount.

If applied, this commit will fix #554.
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rays22 committed Jun 13, 2024
1 parent 18eb34f commit 15889b4
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Showing 2 changed files with 14 additions and 4 deletions.
14 changes: 10 additions & 4 deletions src/ontology/pato-edit.obo
Original file line number Diff line number Diff line change
Expand Up @@ -234,7 +234,7 @@ subset: attribute_slim
subset: relational_slim
subset: scalar_slim
synonym: "concentration" EXACT []
is_a: PATO:0002182 ! molecular quality
is_a: PATO:0000070 ! amount

[Term]
id: PATO:0000034
Expand Down Expand Up @@ -493,7 +493,7 @@ synonym: "number" RELATED []
synonym: "presence" RELATED []
synonym: "presence or absence in organism" EXACT []
synonym: "quantitative" EXACT []
is_a: PATO:0000068 ! qualitative
is_a: PATO:0103000 ! quantitative
relationship: RO:0015012 PATO:0001555 ! reciprocal of has number of

[Term]
Expand Down Expand Up @@ -10238,8 +10238,7 @@ synonym: "mereological quality" EXACT []
synonym: "number" RELATED []
synonym: "number of" EXACT []
xref: OBO_REL:has_part
is_a: PATO:0001241 ! physical object quality
relationship: RO:0015012 PATO:0000070 ! reciprocal of amount
is_a: PATO:0000070 ! amount

[Term]
id: PATO:0001558
Expand Down Expand Up @@ -22580,6 +22579,13 @@ is_a: PATO:0001995 ! organismal quality
property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0002-2908-3327
property_value: http://purl.org/dc/elements/1.1/date "2021-05-17T13:28:41Z" xsd:dateTime

[Term]
id: PATO:0103000
name: quantitative
def: "A quality relating to an amount that can be measured or counted." []
is_a: PATO:0000001 ! quality
created_by: https://orcid.org/0000-0001-8314-2140

[Typedef]
id: correlates_with
name: obsolete correlates_with
Expand Down
4 changes: 4 additions & 0 deletions src/ontology/pato-idranges.owl
Original file line number Diff line number Diff line change
Expand Up @@ -103,3 +103,7 @@ EquivalentTo: xsd:integer[> 102000 , <= 102500]
Datatype: idrange: 24
Annotations: allocatedto: "James McLaughlin"
EquivalentTo: xsd:integer[> 102500 , <= 103000]

Datatype: idrange: 25
Annotations: allocatedto: "Ray Stefancsik"
EquivalentTo: xsd:integer[> 103000 , <= 103200]

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