3.6
Several quality of life improvements:
- Fix #5 by copying the
lastz
binaries into thhttps://github.com/pdimens/LepWrap/settingse conda environment'sbin/
directory only if LepWrap is run inside a conda environment - You can now skip LepMap3 or LepAnchor independently
- LepWrap will notify you if it detects you are not in a conda environment (but does not exit, just let's you know)
- Second positional argument to
LepWrap
added, allowing you to specify the config filename, if it's different fromconfig.yml
- If defaulting to
config.yml
and if it's not found in the project directory, one will be generated with the same defaults that are in the repo - Updated and cleaner logic for edge trimming
- Edge trimming output now comments out the markers instead of removing them from the file (thanks @kstanx via twitter!)
- Edge trimming for LepMap3 now rescales the passing markers to 0 (what the LepAnchor trimming was already doing). The removed markers are scaled as well to keep the numerical relationships between markers consistent, in case you wanted to investigate later. (thanks @makopyan)
- Some optional scripts in
scripts/
renamed and comments clarified
Breaking changes
config.yaml
was renamedconfig.yml
Full Changelog: 3.5...3.6