Enhancement: Edit line list metadata in place #2114
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Sapporo CI | |
| on: | |
| pull_request: | |
| branches: [main] | |
| push: | |
| branches: [main] | |
| jobs: | |
| test: | |
| timeout-minutes: 10 | |
| runs-on: ubuntu-latest | |
| services: | |
| postgres: | |
| image: postgres:14.6 | |
| env: | |
| POSTGRES_DB: irida_next_test | |
| POSTGRES_PASSWORD: test | |
| POSTGRES_USER: test | |
| POSTGRES_HOST: postgres | |
| ports: | |
| - 5432:5432 | |
| # Set health checks to wait until postgres has started | |
| options: >- | |
| --health-cmd pg_isready | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| steps: | |
| - name: Check out code | |
| uses: actions/checkout@v4 | |
| - name: Set up Ruby | |
| uses: ruby/setup-ruby@v1 | |
| with: | |
| bundler-cache: true # runs 'bundle install' and caches installed gems automatically | |
| - name: Set up PNPM | |
| uses: pnpm/action-setup@v4 | |
| with: | |
| version: 9 | |
| - name: Use Node.js 20 | |
| uses: actions/setup-node@v4 | |
| with: | |
| node-version: 20 | |
| cache: "pnpm" | |
| - name: Install dependencies | |
| run: pnpm install | |
| - name: Download Sapporo | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: phac-nml/sapporo-service | |
| ref: irida-next | |
| path: ./sapporo | |
| - name: Build Sapporo | |
| run: | | |
| cd sapporo | |
| IRIDA_NEXT_PATH=${GITHUB_WORKSPACE}/tmp MYUID="$(id -u)" MYGID="$(id -g)" docker compose -f compose.irida-next.yml up -d --build | |
| cd .. | |
| - name: Run Sapporo | |
| uses: JarvusInnovations/background-action@v1 | |
| with: | |
| run: | | |
| IRIDA_NEXT_PATH=${GITHUB_WORKSPACE}/tmp MYUID="$(id -u)" MYGID="$(id -g)" docker compose -f compose.irida-next.yml exec app bash -c "sapporo" | |
| wait-on: http-get://localhost:1122/service-info | |
| wait-for: 2m | |
| working-directory: sapporo | |
| - name: Update permissions | |
| run: sudo chmod -R 777 ${GITHUB_WORKSPACE} | |
| - name: Run tests | |
| run: | | |
| bin/rails test test/integration/sapporo.rb |