Samples Table: Determine query type (#873) #2115
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| name: Sapporo CI | |
| on: | |
| pull_request: | |
| branches: [main] | |
| push: | |
| branches: [main] | |
| jobs: | |
| test: | |
| timeout-minutes: 10 | |
| runs-on: ubuntu-latest | |
| services: | |
| postgres: | |
| image: postgres:14.6 | |
| env: | |
| POSTGRES_DB: irida_next_test | |
| POSTGRES_PASSWORD: test | |
| POSTGRES_USER: test | |
| POSTGRES_HOST: postgres | |
| ports: | |
| - 5432:5432 | |
| # Set health checks to wait until postgres has started | |
| options: >- | |
| --health-cmd pg_isready | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| steps: | |
| - name: Check out code | |
| uses: actions/checkout@v4 | |
| - name: Set up Ruby | |
| uses: ruby/setup-ruby@v1 | |
| with: | |
| bundler-cache: true # runs 'bundle install' and caches installed gems automatically | |
| - name: Set up PNPM | |
| uses: pnpm/action-setup@v4 | |
| with: | |
| version: 9 | |
| - name: Use Node.js 20 | |
| uses: actions/setup-node@v4 | |
| with: | |
| node-version: 20 | |
| cache: "pnpm" | |
| - name: Install dependencies | |
| run: pnpm install | |
| - name: Download Sapporo | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: phac-nml/sapporo-service | |
| ref: irida-next | |
| path: ./sapporo | |
| - name: Build Sapporo | |
| run: | | |
| cd sapporo | |
| IRIDA_NEXT_PATH=${GITHUB_WORKSPACE}/tmp MYUID="$(id -u)" MYGID="$(id -g)" docker compose -f compose.irida-next.yml up -d --build | |
| cd .. | |
| - name: Run Sapporo | |
| uses: JarvusInnovations/background-action@v1 | |
| with: | |
| run: | | |
| IRIDA_NEXT_PATH=${GITHUB_WORKSPACE}/tmp MYUID="$(id -u)" MYGID="$(id -g)" docker compose -f compose.irida-next.yml exec app bash -c "sapporo" | |
| wait-on: http-get://localhost:1122/service-info | |
| wait-for: 2m | |
| working-directory: sapporo | |
| - name: Update permissions | |
| run: sudo chmod -R 777 ${GITHUB_WORKSPACE} | |
| - name: Run tests | |
| run: | | |
| bin/rails test test/integration/sapporo.rb |