todo

phac-nml · Dec 10, 2024 · 815d739 · 815d739
1 parent 14241ba
commit 815d739
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Showing 2 changed files with 7 additions and 5 deletions.
diff --git a/app/controllers/workflow_executions_controller.rb b/app/controllers/workflow_executions_controller.rb
@@ -50,7 +50,7 @@ def workflow_execution_params_attributes
 
   def samples_workflow_execution_params_attributes
     [
-      :id,
+      :id, # index, increment for each one, not necissary for functionality
       :sample_id,
       { samplesheet_params: {} }
     ]

diff --git a/app/graphql/mutations/submit_workflow_execution.rb b/app/graphql/mutations/submit_workflow_execution.rb
@@ -116,10 +116,12 @@ def build_samples_workflow_executions_attributes(sample_info_list)
       sample_info_list.each_with_index do |sample_info, index|
         sample = IridaSchema.object_from_id(sample_info['sample_id'], { expected_type: Sample })
 
-        samplesheet_params = { 'sample' => sample.puid }
-        sample_info['files'].each do |file_info|
-          samplesheet_params[file_info['file_type']] = file_info['file_id']
-        end
+        # pass samplesheet params as a flat json structure
+        #
+        # samplesheet_params = { 'sample' => sample.puid }
+        # sample_info['files'].each do |file_info|
+        #   samplesheet_params[file_info['file_type']] = file_info['file_id']
+        # end
 
         # We expect results to have numbered entries as strings starting with "0", so we use the index
         result[index.to_s] = {