Merge pull request #45 from pharmaverse/43_44_new_presentations_and_n…

…ames

#43 #44 Added new presenters and added presenter names

.lintr

@@ -1,6 +1,10 @@
 linters: linters_with_defaults(
     line_length_linter(120),
+    indentation_linter=NULL,
     object_usage_linter=NULL,
     cyclocomp_linter(complexity_limit = 22),
-    undesirable_function_linter = undesirable_function_linter()
+    undesirable_function_linter=undesirable_function_linter(),
+    brace_linter=NULL,
+    object_name_linter=NULL
   )
+

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: admiraldiscovery
 Title: Discover admiral Functions
-Version: 0.1.1.9000
+Version: 0.1.1.9001
 Authors@R: c(
     person("Daniel D.", "Sjoberg", , "[email protected]", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0003-0862-2018")),

NEWS.md

@@ -1,5 +1,9 @@
 # admiraldiscovery (development version)
 
+* Added additional presentations to the {admiral} presentation listing. (#44)
+
+* Added the names of the presenters to the {admiral} presentation listing. (#43)
+
 # admiraldiscovery 0.1.1
 
 * Converted presentation archive to a {gt} table.

R/get_fns_with_keyword.R

@@ -76,7 +76,7 @@ get_fns_with_keyword <- function(package, keyword, lib.loc = NULL) {
       }),
       alias = lapply(.data$rd_file_contents, extract_alias), # these are the function names
       has_keyword =
-        lapply(.data$rd_file_contents, function(x) stringr::str_detect(x, pattern = glue::glue("\\\\keyword\\{[[keyword]]\\}", .open = "[[", .close = "]]"))) |>
+        lapply(.data$rd_file_contents, function(x) stringr::str_detect(x, pattern = glue::glue("\\\\keyword\\{[[keyword]]\\}", .open = "[[", .close = "]]"))) |> # nolint
           unlist()
     )
 

inst/presentation_archive.csv

@@ -1,11 +1,15 @@
-Year,Title,Conference,Material
-2023,{admiral} - from Open Source to Company Implementation,R in Pharma 2023,[Paper](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2023/Connect/EU/Birmingham/PAP_TT03.pdf) [Slides](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2023/Connect/EU/Birmingham/PRE_TT03.pdf)
-2023,{admiral} - from Open Source to Company Implementation,R in Pharma 2023,[Recording](https://www.youtube.com/watch?v=ZbV3E0_xrrI)
-2023,Cross Industry Package Development,R in Pharma 2023,[Recording](https://www.youtube.com/watch?v=M4L1PPMu0pU)
-2023,Paving the Way for Clinical Submissions in R,PHUSE SDE - London UK,[Slides](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2023/SDE/EU/London/PRE_London09.pdf)
-2023,An overview of {admiral},PHUSE SDE - Summit NJ,[Slides](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2023/SDE/US/Summit/PRE_Summit03.pdf)
-2023,{admiralonco},PHUSE US Connect 2023 - Orlando FL,[Recording](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2023/Connect/US/Florida/REC_OS12.mp4) [Slides](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2023/Connect/US/Florida/PRE_OS12.pdf)
-2023,Programming ADNCA using R and {admiral},PHUSE US Connect 2023 - Orlando FL,[Recording](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2023/Connect/US/Florida/REC_OS09.mp4)
-2022,Clinical Reporting in R,R in Pharma 2022,[Workshop Recording](https://youtu.be/9eod8MLF5ys?si=T9_WwE-K8yGtZlOn)
-2022,Pharmaverse Workshop, PHUSE US Connect 2022 - Atlanta GA,[Slides and resources](https://github.com/pharmaverse/pharmaverse.workshop.phuseUS2022) (including `{admiral}` workshop slides from PHUSE EU Connect 2021)
-2021,Introducing {admiral}, R in Pharma 2021,[Recording](https://www.youtube.com/watch?v=N7Bw8c3D5fU)
+Year,Title,Conference,Presenter(s),Material
+2024,"From Stowaway to Admiral, a R-iveting Tale of a Hierarchical Composite Endpoint's Journey from Idea to Dataset",PHUSE US Connect 2024 - Bethesda MD,Nicole Major,[Slides](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2024/Connect/US/Bethesda/PRE_AS02.pdf) [Paper](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2024/Connect/US/Bethesda/PAP_AS02.pdf)
+2024,Population Pharmacokinetic Analysis Data (ADPPK) Programming in {admiral} and the pharmaverse, PHUSE US Connect 2024 - Bethesda MD, Jeff Dickinson,[Poster](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2024/Connect/US/Bethesda/POS_PP01.pdf) [Paper](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2024/Connect/US/Bethesda/PAP_PP01.pdf)
+2024,{admiral} - from Open Source to Company Implementation, PHUSE US Connect 2024 - Bethesda MD, Ross Farrugia, [Slides](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2024/Connect/US/Bethesda/PRE_OS05.pdf) [Paper](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2024/Connect/US/Bethesda/PAP_OS05.pdf)
+2024,Bridging the Gap Between the pharmaverse and Company Internal Resources,PHUSE US Connect 2024 - Bethesda MD,Kangjie Zhang,[Slides](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2024/Connect/US/Bethesda/PRE_OS12.pdf) [Paper](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2024/Connect/US/Bethesda/PRE_OS12.pdf)
+2023,"Eyes On the Prize – The Development of {admiralophtha}, an R Package for Ophthalmology ADaMs",PHUSE EU Connect 2023 - Birmingham UK,Edoardo Mancini,[Paper](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2023/Connect/EU/Birmingham/PAP_TT03.pdf) [Slides](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2023/Connect/EU/Birmingham/PRE_TT03.pdf)
+2023,{admiral} - from Open Source to Company Implementation,R in Pharma 2023,Edoardo Mancini,[Recording](https://www.youtube.com/watch?v=ZbV3E0_xrrI)
+2023,Cross Industry Package Development,R in Pharma 2023,Stefan Thoma,[Recording](https://www.youtube.com/watch?v=M4L1PPMu0pU)
+2023,Paving the Way for Clinical Submissions in R,PHUSE SDE - London UK,Declan Hodges,[Slides](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2023/SDE/EU/London/PRE_London09.pdf)
+2023,An overview of {admiral},PHUSE SDE - Summit NJ,,[Slides](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2023/SDE/US/Summit/PRE_Summit03.pdf)
+2023,{admiralonco},PHUSE US Connect 2023 - Orlando FL,Matthew Marino and Neharika Sharma,[Recording](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2023/Connect/US/Florida/REC_OS12.mp4) [Slides](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2023/Connect/US/Florida/PRE_OS12.pdf)
+2023,Programming ADNCA using R and {admiral},PHUSE US Connect 2023 - Orlando FL,Jeff Dickinson,[Recording](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2023/Connect/US/Florida/REC_OS09.mp4)
+2022,Clinical Reporting in R,R in Pharma 2022,"Christina Fillmore, Ellis Hughes and Thomas Neitmann",[Workshop Recording](https://youtu.be/9eod8MLF5ys?si=T9_WwE-K8yGtZlOn)
+2022,Pharmaverse Workshop, PHUSE US Connect 2022 - Atlanta GA,"Ross Farrugia, Alice Ehmann, Mike Stackhouse and Tad Lewandowski",[Slides and resources](https://github.com/pharmaverse/pharmaverse.workshop.phuseUS2022) (including `{admiral}` workshop slides from PHUSE EU Connect 2021)
+2021,Introducing {admiral}, R in Pharma 2021,Thomas Neitmann and Ning Leng,[Recording](https://www.youtube.com/watch?v=N7Bw8c3D5fU)

tests/spelling.R

@@ -1,3 +1,6 @@
-if(requireNamespace('spelling', quietly = TRUE))
-  spelling::spell_check_test(vignettes = TRUE, error = FALSE,
-                             skip_on_cran = TRUE)
+if (requireNamespace("spelling", quietly = TRUE)) {
+  spelling::spell_check_test(
+    vignettes = TRUE, error = FALSE,
+    skip_on_cran = TRUE
+  )
+}

vignettes/presentation_archive.Rmd

@@ -21,10 +21,15 @@ knitr::opts_chunk$set(
 In the table below you can find links to material from various `{admiral}`-related presentations given by members of our community over the years.
 
 ```{r echo=FALSE}
-admiraldiscovery::presentation_archive |> 
+admiraldiscovery::presentation_archive |>
   gt::gt() |>
   gt::fmt_markdown(columns = c("Material")) |>
-  gt::cols_width(Year ~ gt::pct(4), Material ~ gt::pct(8), c(Title, Conference) ~ gt::pct(20)) |>
+  gt::cols_width(
+    Year ~ gt::pct(4),
+    Material ~ gt::pct(8),
+    `Presenter(s)` ~ gt::pct(6),
+    c(Title, Conference) ~ gt::pct(15)
+  ) |>
   gt::cols_align(align = "left")
 ```