Fix docs

pinin4fjords · Jun 24, 2024 · 89b4649 · 89b4649
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diff --git a/R/accessory.R b/R/accessory.R
@@ -558,10 +558,6 @@ eselistFromYAML <- function(configfile) {
 #' Build an ExploratorySummarisedExperimentList from a description provided in a list
 #'
 #' @param config Hierachical named list with input components. See \code{eselistFromYAML} for detail.
-#' @param should_transform A boolean indicating if the log2 transformation should be applied.
-#'                   If TRUE, log2 transformation is applied unconditionally.
-#'                   If FALSE, no transformation is applied.
-#'                   If NULL (default), a conditional transformation based on threshold is applied.
 #' @param log2_threshold A numeric threshold to determine if the matrix should be log-transformed.
 #'                  This is only checked if should_transform is NULL.
 #' @param log2_assays A string parameter that can be NULL, empty, or a non-empty string.

diff --git a/man/cond_log2_transform_matrix.Rd b/man/cond_log2_transform_matrix.Rd
diff --git a/man/eselistfromConfig.Rd b/man/eselistfromConfig.Rd
diff --git a/man/ggplot_boxplot.Rd b/man/ggplot_boxplot.Rd
diff --git a/man/ggplot_densityplot.Rd b/man/ggplot_densityplot.Rd
diff --git a/man/plotly_boxplot.Rd b/man/plotly_boxplot.Rd
diff --git a/man/plotly_densityplot.Rd b/man/plotly_densityplot.Rd
diff --git a/man/plotly_quartiles.Rd b/man/plotly_quartiles.Rd