Fixed a bug that is caused if you include files that don't finish wit… #122
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v2 | |
| - uses: actions/cache@v2 | |
| with: | |
| path: | | |
| ~/opt | |
| ~/.ccache | |
| key: ccache-${{ runner.os }}-${{ github.sha }} | |
| restore-keys: ccache-${{ runner.os }}- | |
| - name: Set up Python 3.8 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.8 | |
| - name: Set paths | |
| run: | | |
| echo "$HOME/opt/bin" >> $GITHUB_PATH | |
| echo "CPATH=$HOME/opt/include:$HOME/opt/libtorch/include/torch/csrc/api/include/:$HOME/opt/libtorch/include/:$HOME/opt/libtorch/include/torch:$CPATH" >> $GITHUB_ENV | |
| echo "INCLUDE=$HOME/opt/include:$HOME/opt/libtorch/include/torch/csrc/api/include/:$HOME/opt/libtorch/include/:$HOME/opt/libtorch/include/torch:$INCLUDE" >> $GITHUB_ENV | |
| echo "LIBRARY_PATH=$HOME/opt/lib:$HOME/opt/libtorch/lib:$LIBRARY_PATH" >> $GITHUB_ENV | |
| echo "LD_LIBRARY_PATH=$HOME/opt/lib:$HOME/opt/libtorch/lib:$LD_LIBRARY_PATH" >> $GITHUB_ENV | |
| echo "PYTHONPATH=$HOME/opt/lib/plumed/python:$PYTHONPATH" >> $GITHUB_ENV | |
| # needed to avoid MPI warning | |
| echo "OMPI_MCA_btl=^openib" >> $GITHUB_ENV | |
| - name: Install plumed | |
| run: | | |
| sudo apt update | |
| sudo apt install mpi-default-bin mpi-default-dev | |
| sudo apt install libfftw3-dev gsl-bin libgsl0-dev libboost-serialization-dev | |
| sudo apt install ccache | |
| sudo apt-get update | |
| pip install PyYAML pytz | |
| git clone --bare https://github.com/plumed/plumed2.git | |
| sudo ln -s ccache /usr/local/bin/mpic++ | |
| export PATH=/usr/lib/ccache:${PATH} | |
| ccache -s | |
| # .ci/install.libtorch | |
| # version=master or version=f123f12f3 to select a specific version | |
| # pick newest release branch (alphabetic, will fail at v2.10) | |
| # CXX="mpic++" .ci/install.plumed version="$(cd plumed2.git ; git branch | sed "s/^ *//" | grep '^v2\.[0-9]$' | tail -n 1)" repo=$PWD/plumed2.git | |
| # GB: in addition, we install master version as plumed_master | |
| CXX="mpic++" .ci/install.plumed version=master repo=$PWD/plumed2.git | |
| ccache -s | |
| - name: Copy json syntax to directory to upload | |
| run: | | |
| mkdir json | |
| cp /home/runner/opt/lib/plumed/json/syntax.json json | |
| - name: Put json file so it can be downloaded | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: json-syntax | |
| path: json | |
| - name: Install PlumedToHTML | |
| # And install the package | |
| run: python setup.py install | |
| - name: Run tests | |
| run: | | |
| pip install tox | |
| tox | |
| - name: Upload Coverage to Codecov | |
| uses: codecov/codecov-action@v2 |