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@kimrutherford @github-actions
kimrutherford authored and github-actions[bot] committed Dec 1, 2024
1 parent 46e9c8d commit 06f865f
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Showing 10 changed files with 13,545 additions and 13,540 deletions.
10,452 changes: 5,225 additions & 5,227 deletions data/alleles.tsv
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39 changes: 23 additions & 16 deletions data/chromosome1.contig
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Original file line number Diff line number Diff line change
Expand Up @@ -1501,7 +1501,7 @@ FT /product="non-coding RNA, possible alternative UTR"
FT /obsolete_name="SPAC11D3.14c-antisense-1"
FT CDS complement(131319..135101)
FT /colour=7
FT /product="5-oxoprolinase (ATP-hydrolizing) (predicted)"
FT /product="5-oxoprolinase (ATP-hydrolizing), Oxp2"
FT /systematic_id="SPAC11D3.14c"
FT /db_xref="SPD:39/39C08"
FT /controlled_curation="term=genome organization, divergent
Expand All @@ -1518,6 +1518,7 @@ FT /controlled_curation="term=species distribution, conserved
FT in fungi; date=20081110"
FT /controlled_curation="term=species distribution,
FT predominantly single copy (one to one); date=20081110"
FT /primary_name="oxp2"
FT 5'UTR complement(135102..135147)
FT /systematic_id="SPAC11D3.14c"
FT /db_xref="PMID:30566651"
Expand Down Expand Up @@ -1551,7 +1552,7 @@ FT /product="non-coding RNA"
FT /obsolete_name="SPAC11D3.15-antisense-1"
FT CDS 136331..140284
FT /colour=7
FT /product="5-oxoprolinase (ATP-hydrolizing) (predicted)"
FT /product="5-oxoprolinase (ATP-hydrolizing), Oxp1"
FT /systematic_id="SPAC11D3.15"
FT /db_xref="SPD:48/48F05"
FT /controlled_curation="term=genome organization, divergent
Expand All @@ -1568,6 +1569,7 @@ FT /controlled_curation="term=species distribution, conserved
FT in fungi; date=20081110"
FT /controlled_curation="term=species distribution,
FT predominantly single copy (one to one); date=20081110"
FT /primary_name="oxp1"
FT lncRNA complement(139327..139550)
FT /db_xref="PMID:29914874"
FT /systematic_id="SPNCRNA.2059"
Expand Down Expand Up @@ -21767,6 +21769,7 @@ FT /controlled_curation="term=species distribution, conserved
FT in fungi; date=20081110"
FT /controlled_curation="term=species distribution, conserved
FT in bacteria; date=20170226"
FT /primary_name="mta3"
FT 5'UTR complement(1474540..1474639)
FT /systematic_id="SPAC9.06c"
FT /db_xref="PMID:30566651"
Expand Down Expand Up @@ -53086,9 +53089,9 @@ FT 3'UTR complement(3491080..3491582)
FT /systematic_id="SPAC328.07c"
FT /db_xref="PMID:21511999"
FT CDS complement(join(3491583..3492398,3492467..3492484))
FT /colour=7
FT /colour=2
FT /product="human NEDD4 family-interacting protein ortholog
FT (predicted)"
FT Bsd1"
FT /systematic_id="SPAC328.07c"
FT /controlled_curation="term=species distribution, conserved
FT in fungi; date=20081110"
Expand Down Expand Up @@ -58094,7 +58097,7 @@ FT /systematic_id="SPNCRNA.3709"
FT /product="non-coding RNA"
FT CDS 3841581..3842441
FT /colour=7
FT /product="3-hydroxyacyl-CoA dehydrogenase (predicted)"
FT /product="3-hydroxyacyl-CoA dehydrogenase, Fox2"
FT /systematic_id="SPAC4H3.08"
FT /db_xref="SPD:11/11E05"
FT /controlled_curation="term=species distribution, conserved
Expand All @@ -58113,6 +58116,7 @@ FT /controlled_curation="term=warning, this protein is
FT shorter than the S. cerevisiae ortholog and missing the
FT enoyl-CoA hydratase domain. Other genes for fatty acid
FT beta-oxidation are also absent; date=20151211"
FT /primary_name="fox2"
FT 3'UTR 3842442..3843136
FT /systematic_id="SPAC4H3.08"
FT /db_xref="PMID:21511999"
Expand Down Expand Up @@ -64575,7 +64579,7 @@ FT /systematic_id="SPAC2C4.07c"
FT /db_xref="PMID:21511999"
FT CDS complement(4271297..4274080)
FT /colour=2
FT /product="3'-5'-exoribonuclease activity Dis3L2"
FT /product="cytoplasmic P body 3'-5'-exoribonuclease Dis3L2"
FT /systematic_id="SPAC2C4.07c"
FT /db_xref="SPD:47/47C04"
FT /controlled_curation="term=species distribution, no
Expand Down Expand Up @@ -65219,6 +65223,9 @@ FT db_xref=PMID:26258632; date=20160119"
FT /controlled_curation="term=subunit composition,
FT homomeric(2); annotation_extension=located_in(GO:0000777);
FT db_xref=PMID:26258632; date=20160119"
FT /controlled_curation="term=complementation, functionally
FT complemented by human EG5; db_xref=PMID:34864879;
FT date=20241128"
FT lncRNA 4307266..4307551
FT /db_xref="PMID:29914874"
FT /systematic_id="SPNCRNA.3935"
Expand Down Expand Up @@ -69219,10 +69226,8 @@ FT 3'UTR complement(4570305..4570497)
FT /systematic_id="SPAC12B10.01c"
FT /db_xref="PMID:21511999"
FT CDS complement(4570498..4575441)
FT /colour=7
FT /product="HECT-type ubiquitin-protein ligase E3,
FT implicated in negative regulation of ubiquitinated
FT chromatin formation (predicted)"
FT /colour=2
FT /product="HECT-type ubiquitin-protein ligase E3, Hul6"
FT /synonym="SPAC31F12.02c"
FT /synonym="SPAC637.15c"
FT /systematic_id="SPAC12B10.01c"
Expand All @@ -69240,6 +69245,7 @@ FT /controlled_curation="term=species distribution, conserved
FT in fungi; date=20081110"
FT /controlled_curation="term=species distribution, conserved
FT in eukaryotes only; date=20081110"
FT /primary_name="hul6"
FT lncRNA 4572682..4574887
FT /db_xref="PMID:29914874"
FT /systematic_id="SPNCRNA.4060"
Expand Down Expand Up @@ -73781,7 +73787,7 @@ FT condition=FYECO:0000126; during=GO:0072690;
FT score=0.637589; db_xref=PMID:30566651"
FT CDS 4868588..4868959
FT /colour=10
FT /note="YOL109W tentative , reciprocal blast best hit, size
FT /note="YOL109W tentative ,reciprocal blast best hit, size
FT and compositon agree"
FT /product="conserved fungal protein"
FT /systematic_id="SPAC4F10.17"
Expand Down Expand Up @@ -73849,8 +73855,7 @@ FT /systematic_id="SPAC4F10.19c"
FT /db_xref="PMID:21511999"
FT CDS complement(join(4872176..4872572,4872686..4872753))
FT /colour=7
FT /product="zf-HIT family C/D snoRNP assembly protein Hit1
FT (predicted)"
FT /product="zf-HIT family C/D snoRNP assembly protein Hit1"
FT /systematic_id="SPAC4F10.19c"
FT /db_xref="SPD:06/06C01"
FT /controlled_curation="term=zinc finger protein;
Expand Down Expand Up @@ -74049,9 +74054,10 @@ FT /controlled_curation="term=name description, Transcripts
FT Altered in Meiosis; db_xref=PMID:21270388; date=20110131"
FT /controlled_curation="term=warning, new gene;
FT db_xref=PMID:21511999; date=20110311"
FT /controlled_curation="term=species distribution,
FT predominantly single copy (one to one); date=20241110"
FT /product="mitochondrial intermembrane space protein,
FT mature-T-Cell Proliferation I type ortholog, unknown
FT biological role Cmc4"
FT unknown biological role Cmc4"
FT /colour=10
FT /primary_name="cmc4"
FT /synonym="tam2"
Expand Down Expand Up @@ -78815,7 +78821,7 @@ FT /systematic_id="SPNCRNA.4341"
FT /product="non-coding RNA"
FT CDS 5188171..5188566
FT /colour=7
FT /product="yippee-like protein"
FT /product="yippee-like protein, Moh1"
FT /systematic_id="SPAPJ691.02"
FT /controlled_curation="term=species distribution, conserved
FT in eukaryotes; date=20081110"
Expand All @@ -78827,6 +78833,7 @@ FT /controlled_curation="term=species distribution, conserved
FT in fungi; date=20081110"
FT /controlled_curation="term=species distribution, conserved
FT in eukaryotes only; date=20081110"
FT /primary_name="moh1"
FT 3'UTR 5188567..5189187
FT /systematic_id="SPAPJ691.02"
FT /db_xref="PMID:21511999"
Expand Down
14 changes: 8 additions & 6 deletions data/chromosome2.contig
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Original file line number Diff line number Diff line change
Expand Up @@ -18825,7 +18825,7 @@ FT /db_xref="PMID:21511999"
FT CDS complement(join(1274979..1276897,1276948..1277059))
FT /colour=2
FT /primary_name="mad1"
FT /product="mitotic spindle checkpoint protein Mad1"
FT /product="Mad2 receptor at unattached kinetochores, Mad1"
FT /db_xref="SPD:37/37D06"
FT /systematic_id="SPBC3D6.04c"
FT /controlled_curation="term=species distribution, conserved
Expand Down Expand Up @@ -20599,7 +20599,7 @@ FT /db_xref="PMID:21511999"
FT CDS complement(1391667..1392968)
FT /EC_number="3.3.1.1"
FT /colour=7
FT /product="adenosylhomocysteinase (predicted)"
FT /product="adenosylhomocysteinase, Sah1 "
FT /db_xref="SPD:32/32G11"
FT /systematic_id="SPBC8D2.18c"
FT /controlled_curation="term=species distribution, conserved
Expand All @@ -20617,6 +20617,7 @@ FT predominantly single copy (one to one); date=20081110"
FT /controlled_curation="term=warning, the gene described as
FT SPBC8D2.18c in Abe and Shimoda (2000) is SPBC8D2.19;
FT db_xref=PMID:10747048; date=20160323"
FT /primary_name="sah1"
FT lncRNA 1392181..1392417
FT /db_xref="PMID:29914874"
FT /systematic_id="SPNCRNA.5161"
Expand Down Expand Up @@ -44192,8 +44193,7 @@ FT /product="non-coding RNA"
FT CDS complement(2907373..2908398)
FT /colour=7
FT /obsolete_name="mrps2"
FT /product="protein repair carboxyl methyl esterase
FT (predicted)"
FT /product="protein repair carboxyl methyl esterase, Pme1"
FT /db_xref="SPD:15/15D10"
FT /systematic_id="SPBP4H10.17c"
FT /controlled_curation="term=species distribution, conserved
Expand All @@ -44210,6 +44210,8 @@ FT /controlled_curation="term=species distribution,
FT predominantly single copy (one to one); date=20081110"
FT /controlled_curation="term=warning, previously annotated
FT incorrectly as ribosomal protein; date=20160323"
FT /controlled_curation="term=name description, Protein
FT Methyl Esterase; date=20241129"
FT 5'UTR complement(2908399..2908620)
FT /systematic_id="SPBP4H10.17c"
FT /db_xref="PMID:30566651"
Expand Down Expand Up @@ -62762,8 +62764,8 @@ FT /systematic_id="SPBC1347.12"
FT /db_xref="PMID:21511999"
FT CDS complement(join(4085349..4085476,4085520..4085793,4085840..4086055,4086151..4086438))
FT /colour=7
FT /product="mitochondrial ribose methyltransferase Mrm1
FT (predicted)"
FT /product="mitochondrial rRNA ribose methyltransferase
FT Mrm1"
FT /db_xref="SPD:17/17A07"
FT /systematic_id="SPBC1347.13c"
FT /controlled_curation="term=species distribution, conserved
Expand Down
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