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@kimrutherford @github-actions
kimrutherford authored and github-actions[bot] committed Dec 15, 2024
1 parent f3dc073 commit 30a19d8
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Showing 11 changed files with 14,396 additions and 14,364 deletions.
10,853 changes: 5,432 additions & 5,421 deletions data/alleles.tsv
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26 changes: 16 additions & 10 deletions data/chromosome1.contig
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Original file line number Diff line number Diff line change
Expand Up @@ -4533,7 +4533,8 @@ FT /systematic_id="SPAC12G12.04"
FT CDS complement(340107..341855)
FT /colour=2
FT /primary_name="mcp60"
FT /product="mitochondrial heat shock protein Hsp60/Mcp60"
FT /product="mitochondrial protein folding chaperone
FT Hsp60/Mcp60"
FT /synonym="hsp60"
FT /systematic_id="SPAC12G12.04"
FT /controlled_curation="term=misc functional group,
Expand Down Expand Up @@ -9724,7 +9725,7 @@ FT score=23.365200; db_xref=PMID:30566651"
FT CDS join(691530..691656,691706..691803,691853..691984)
FT /colour=7
FT /primary_name="atp20"
FT /product="F1-FO ATP synthase subunit G (predicted)"
FT /product="F1-FO ATP synthase F(o) subunit G, Atp20"
FT /systematic_id="SPAC22F3.07c"
FT /db_xref="SPD:04/04A07"
FT /controlled_curation="term=species distribution, conserved
Expand Down Expand Up @@ -10999,8 +11000,8 @@ FT /db_xref="PMID:21511999"
FT CDS complement(join(782142..782336,782438..782704,782803..783144))
FT /colour=7
FT /primary_name="atp10"
FT /product="mitochondrial F1-FO ATP synthase chaperone Atp10
FT (predicted)"
FT /product="mitochondrial F1-FO ATP synthase chaperone,
FT catalytic core Atp10"
FT /systematic_id="SPAC4G8.11c"
FT /db_xref="SPD:14/14G05"
FT /controlled_curation="term=species distribution, conserved
Expand Down Expand Up @@ -13817,7 +13818,8 @@ FT /db_xref="PMID:21511999"
FT CDS complement(968783..970360)
FT /colour=2
FT /primary_name="atp2"
FT /product="F1-FO ATP synthase beta subunit Atp2"
FT /product="F1-FO ATP synthase beta subunit (central stalk)
FT Atp2"
FT /systematic_id="SPAC222.12c"
FT /db_xref="SPD:25/25D07"
FT /controlled_curation="term=complementation, functionally
Expand Down Expand Up @@ -15066,7 +15068,7 @@ FT db_xref=PMID:30566651"
FT CDS join(1047316..1047385,1047435..1047485,1047530..1047591)
FT /colour=7
FT /primary_name="atp18"
FT /product="F1-FO ATP synthase subunit J"
FT /product="F1-FO ATP synthase F(o) subunit J, Atp18"
FT /systematic_id="SPAC23C4.11"
FT /db_xref="SPD:01/01C05"
FT /controlled_curation="term=species distribution, conserved
Expand Down Expand Up @@ -16242,7 +16244,7 @@ FT /systematic_id="SPNCRNA.2490"
FT /product="non-coding RNA"
FT CDS 1120548..1123529
FT /colour=7
FT /product="alpha-glucosidase (predicted)"
FT /product="extracellular alpha-glucosidase Gto2"
FT /synonym="SPAC56F8.01"
FT /systematic_id="SPAC30D11.01c"
FT /db_xref="SPD:47/47F07"
Expand Down Expand Up @@ -38525,7 +38527,7 @@ FT /systematic_id="SPAC25H1.10c"
FT /db_xref="PMID:21511999"
FT CDS complement(join(2532904..2532928,2532991..2533127,2533170..2533214))
FT /db_xref="PMID:18488015"
FT /product="F1-FO ATP synthase subunit K (predicted)"
FT /product="F1-FO ATP synthase F(o) subunit K, Atp19"
FT /colour=7
FT /primary_name="atp19"
FT /controlled_curation="term=species distribution, conserved
Expand Down Expand Up @@ -82687,9 +82689,9 @@ FT /feature_source="evidence=ECO:0000309; source=SO:0001238;
FT condition=FYECO:0000126; during=GO:0072690; score=407.838;
FT db_xref=PMID:30566651"
FT CDS 5449717..5451522
FT /colour=7
FT /colour=2
FT /product="extracellular 5'-nucleotidase, human NT5E family
FT (predicted)"
FT Efn2"
FT /systematic_id="SPAC1039.02"
FT /db_xref="SPD:36/36E06"
FT /controlled_curation="term=species distribution, conserved
Expand All @@ -82704,6 +82706,10 @@ FT /controlled_curation="term=species distribution, conserved
FT in vertebrates; date=20161031"
FT /controlled_curation="term=species distribution, conserved
FT in eukaryotes only; date=20161031"
FT /controlled_curation="term=name description, Extracellular
FT Five-prime Nucleotidase; db_xref=PMID:39660919;
FT date=20241212"
FT /primary_name="efn2"
FT lncRNA complement(5449764..5451990)
FT /db_xref="PMID:29914874"
FT /systematic_id="SPNCRNA.4457"
Expand Down
39 changes: 23 additions & 16 deletions data/chromosome2.contig
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Original file line number Diff line number Diff line change
Expand Up @@ -5109,7 +5109,7 @@ FT /product="non-coding RNA"
FT CDS complement(join(383527..383612,383703..383874,383940..383960))
FT /colour=7
FT /primary_name="tim11"
FT /product="F1-FO ATP synthase subunit E (predicted)"
FT /product="F1-FO ATP synthase F(o) subunit E, Tim11"
FT /db_xref="SPD:01/01E10"
FT /systematic_id="SPBC106.05c"
FT /controlled_curation="term=species distribution, conserved
Expand Down Expand Up @@ -5196,7 +5196,7 @@ FT /obsolete_name="mug2-antisense-1"
FT CDS complement(387841..388731)
FT /colour=10
FT /obsolete_name="B13958-1"
FT /product="DUF1773 family protein"
FT /product="mug2/mug135/meu2 family protein"
FT /db_xref="SPD:12/12B03"
FT /primary_name="mug2"
FT /systematic_id="SPBC106.08c"
Expand Down Expand Up @@ -6142,7 +6142,8 @@ FT CDS complement(445417..446808)
FT /EC_number="3.1.3.2"
FT /colour=2
FT /primary_name="pho4"
FT /product="thiamine-repressible acid phosphatase Pho4"
FT /product="extracellular thiamine-repressible acid
FT phosphatase Pho4"
FT /db_xref="SPD:21/21E07"
FT /systematic_id="SPBC428.03c"
FT /controlled_curation="term=species distribution, conserved
Expand Down Expand Up @@ -11801,9 +11802,9 @@ FT 3'UTR complement(828602..829090)
FT /systematic_id="SPBC530.15c"
FT /db_xref="PMID:21511999"
FT CDS complement(829091..830641)
FT /colour=7
FT /colour=2
FT /product="spermidine family transmembrane transporter
FT (predicted)"
FT Shp2"
FT /synonym="SPBC661.01"
FT /db_xref="SPD:25/25B05"
FT /systematic_id="SPBC530.15c"
Expand All @@ -11813,6 +11814,9 @@ FT /controlled_curation="term=species distribution, conserved
FT in bacteria; date=20081110"
FT /controlled_curation="term=species distribution, conserved
FT in fungi; date=20081110"
FT /controlled_curation="term=Suppressor of High Pi;
FT db_xref=PMID:39662831; date=20241212"
FT /primary_name="shp2"
FT 5'UTR complement(830642..831371)
FT /systematic_id="SPBC530.15c"
FT /db_xref="PMID:30566651"
Expand Down Expand Up @@ -14687,7 +14691,7 @@ FT /controlled_curation="term=species distribution, no
FT apparent S. cerevisiae ortholog; date=20140815"
FT /controlled_curation="term=species distribution, conserved
FT in eukaryotes; date=20140815"
FT /product="DUF1773 family protein"
FT /product="mug2/mug135/meu2 family protein"
FT lncRNA complement(1033852..1034134)
FT /db_xref="PMID:29914874"
FT /systematic_id="SPNCRNA.4985"
Expand Down Expand Up @@ -30816,8 +30820,7 @@ FT /db_xref="PMID:21511999"
FT CDS complement(join(2057098..2057121,2057168..2057358,2057411..2057446,2057495..2057540,2057588..2057602))
FT /colour=7
FT /primary_name="atp14"
FT /product="F1-FO ATP synthase subunit H /peripheral stalk
FT subunit F6, Atp14"
FT /product="F1-FO ATP synthase F(o) subunit H, Atp14"
FT /db_xref="SPD:05/05A01"
FT /systematic_id="SPBC29A3.10c"
FT /controlled_curation="term=species distribution, conserved
Expand Down Expand Up @@ -31391,7 +31394,7 @@ FT /product="non-coding RNA"
FT CDS join(2091892..2091985,2091987..2092234)
FT /colour=13
FT /obsolete_name="SPBC18E5.14"
FT /product="pseudogene, DUF1773 family"
FT /product="pseudogene, mug2/mug135/meu2 family"
FT /pseudo
FT /systematic_id="SPBC18E5.15"
FT 3'UTR complement(2092551..2094392)
Expand Down Expand Up @@ -46644,7 +46647,8 @@ FT score=82.312600; db_xref=PMID:30566651"
FT CDS 3046852..3047355
FT /colour=7
FT /primary_name="atp16"
FT /product="F1-FO ATP synthase delta subunit (predicted)"
FT /product="F1-FO ATP synthase delta subunit (central stalk)
FT Atp16"
FT /db_xref="SPD:04/04E02"
FT /systematic_id="SPBC13E7.04"
FT /controlled_curation="term=species distribution, conserved
Expand Down Expand Up @@ -51197,8 +51201,6 @@ FT /primary_name="rhs1"
FT /product="fungal protein, conserved in ascomycetes"
FT /db_xref="SPD:17/17D10"
FT /systematic_id="SPBC17D1.05"
FT /controlled_curation="term=species distribution,
FT Schizosaccharomyces specific; date=20140820"
FT /controlled_curation="term=name description, Regulator of
FT Heat Sensitivity; date=20230414"
FT /controlled_curation="term=species distribution, conserved
Expand Down Expand Up @@ -58001,7 +58003,8 @@ FT CDS complement(join(3784187..3784361,3784434..3784462))
FT /EC_number="3.6.3.14"
FT /colour=7
FT /primary_name="atp15"
FT /product="F1-FO ATP synthase epsilon subunit (predicted)"
FT /product="F1-FO ATP synthase epsilon subunit (central
FT stalk) Atp15"
FT /db_xref="SPD:01/01C06"
FT /systematic_id="SPBC31F10.15c"
FT /controlled_curation="term=species distribution, conserved
Expand Down Expand Up @@ -59840,7 +59843,7 @@ FT CDS complement(join(3912167..3912403,3912456..3912509))
FT /EC_number="3.6.3.14"
FT /colour=7
FT /primary_name="atp17"
FT /product="F1-FO ATP synthase subunit F (predicted)"
FT /product="F1-FO ATP synthase F(o) subunit F (predicted)"
FT /db_xref="SPD:02/02B01"
FT /systematic_id="SPBC1604.11"
FT /controlled_curation="term=species distribution, conserved
Expand Down Expand Up @@ -68264,9 +68267,9 @@ FT 3'UTR complement(4469018..4469199)
FT /systematic_id="SPBPB2B2.06c"
FT /db_xref="PMID:21511999"
FT CDS complement(4469200..4471005)
FT /colour=7
FT /colour=2
FT /product="extracellular 5'-nucleotidase, human NT5E family
FT (predicted)"
FT Efn1"
FT /db_xref="SPD:49/49C08"
FT /systematic_id="SPBPB2B2.06c"
FT /controlled_curation="term=species distribution, conserved
Expand All @@ -68279,6 +68282,10 @@ FT /controlled_curation="term=species distribution, conserved
FT in vertebrates; date=20161031"
FT /controlled_curation="term=species distribution, conserved
FT in eukaryotes only; date=20161031"
FT /controlled_curation="term=name description, Extracellular
FT Five-prime Nucleotidase; db_xref=PMID:39660919;
FT date=20241212"
FT /primary_name="efn1"
FT 5'UTR complement(4471006..4471164)
FT /systematic_id="SPBPB2B2.06c"
FT /db_xref="PMID:30566651"
Expand Down
24 changes: 10 additions & 14 deletions data/chromosome3.contig
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Original file line number Diff line number Diff line change
Expand Up @@ -131,7 +131,7 @@ FT /controlled_curation="term=species distribution, no
FT apparent S. cerevisiae ortholog; date=20140815"
FT /controlled_curation="term=species distribution, conserved
FT in eukaryotes; date=20140815"
FT /product="DUF1773 family protein"
FT /product="mug2/mug135/meu2 family protein"
FT lncRNA 29535..29898
FT /db_xref="PMID:29914874"
FT /db_xref="PMID:18488015"
Expand Down Expand Up @@ -181,7 +181,7 @@ FT /systematic_id="SPNCRNA.6680"
FT /product="non-coding RNA"
FT CDS 36421..36657
FT /colour=10
FT /product="mug2/mug135/meu2 family"
FT /product="mug2/mug135/meu2 family protein"
FT /systematic_id="SPCP20C8.04"
FT /controlled_curation="term=species distribution, no
FT apparent S. cerevisiae ortholog; date=19700101"
Expand Down Expand Up @@ -1150,7 +1150,7 @@ FT /product="non-coding RNA"
FT CDS complement(98721..99485)
FT /colour=10
FT /primary_name="meu23"
FT /product="DUF1773 family protein"
FT /product="mug2/mug135/meu2 family protein"
FT /obsolete_name="B13958-2"
FT /db_xref="SPD:09/09E01"
FT /systematic_id="SPCC613.11c"
Expand Down Expand Up @@ -1382,7 +1382,7 @@ FT /systematic_id="SPCC330.04c"
FT /db_xref="PMID:21511999"
FT CDS complement(112305..113378)
FT /colour=10
FT /product="DUF1773 family protein, with repeat expansion"
FT /product="mug2/mug135/meu2 family protein, with repeat expansion"
FT /db_xref="SPD:16/16F01"
FT /primary_name="mug135"
FT /systematic_id="SPCC330.04c"
Expand Down Expand Up @@ -10232,19 +10232,17 @@ FT /db_xref="SPD:02/02C04"
FT /systematic_id="SPCC18B5.09c"
FT /controlled_curation="term=warning, previously annotated
FT as dubious; cv=warning; date=20100606"
FT /controlled_curation="term=species distribution,
FT Schizosaccharomyces specific; date=20140820"
FT /controlled_curation="term=name description, telomerase
FT holoenzyme component; db_xref=PMID:37403782;
FT date=20230706"
FT /controlled_curation="term=species distribution, conserved
FT in fungi; date=20230711"
FT /controlled_curation="term=species distribution, conserved
FT in fungi only; date=20230711"
FT /controlled_curation="term=species distribution, conserved
FT in eukaryotes; date=20230711"
FT /controlled_curation="term=species distribution, no
FT apparent S. cerevisiae ortholog; date=20230711"
FT /controlled_curation="term=species distribution, conserved
FT in eukaryotes only; date=20230711"
FT /primary_name="thc1"
FT CDS complement(join(738016..738159,738226..738304,738350..738594,738637..738705,738758..738849,738893..739166,739229..739255))
FT /colour=7
Expand Down Expand Up @@ -13624,10 +13622,8 @@ FT Galactose-Specific Flocculation; db_xref=PMID:22180499;
FT date=20120219"
FT /controlled_curation="term=name description, Pombe
FT FLocculin; date=20130701"
FT /controlled_curation="term=species distribution, conserved
FT in fungi; date=20140811"
FT /controlled_curation="term=species distribution, no
FT apparent S. cerevisiae ortholog; date=20140811"
FT /controlled_curation="term=species distribution,
FT Schizosaccharomyces specific; date=20241212"
FT /controlled_curation="term=gene expression, RNA level;
FT annotation_extension=during(GO:0072690); qualifier=absent;
FT evidence=ECO:0005653; db_xref=PMID:22180499;
Expand Down Expand Up @@ -33680,7 +33676,7 @@ FT /systematic_id="SPCC569.03"
FT /db_xref="PMID:21511999"
FT CDS complement(join(2430334..2430776,2430840..2431347))
FT /colour=10
FT /product="DUF1773 family protein"
FT /product="mug2/mug135/meu2 family protein"
FT /db_xref="SPD:19/19A04"
FT /systematic_id="SPCC569.03"
FT /controlled_curation="term=species distribution, no
Expand Down Expand Up @@ -33735,7 +33731,7 @@ FT /systematic_id="SPNCRNA.7769"
FT /product="non-coding RNA"
FT CDS 2434691..2435662
FT /colour=10
FT /product="DUF1773 family protein"
FT /product="mug2/mug135/meu2 family protein"
FT /controlled_curation="term=species distribution, conserved
FT in fungi; date=20140815"
FT /controlled_curation="term=species distribution, conserved
Expand Down
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