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updated to last revision
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@kimrutherford @github-actions
kimrutherford authored and github-actions[bot] committed Sep 1, 2024
1 parent 343a5bb commit 59ae6e1
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Showing 11 changed files with 27,481 additions and 9,530 deletions.
10,442 changes: 5,221 additions & 5,221 deletions data/alleles.tsv
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3 changes: 1 addition & 2 deletions data/chromosome1.contig
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Original file line number Diff line number Diff line change
Expand Up @@ -1894,8 +1894,6 @@ FT /primary_name="pan6"
FT /product="pantoate-beta-alanine ligase"
FT /systematic_id="SPAC5H10.08c"
FT /db_xref="SPD:11/11B08"
FT /controlled_curation="term=warning, co-expressed with
FT adjacent gene; qualifier=predicted; date=20100821"
FT /controlled_curation="term=species distribution, conserved
FT in eukaryotes; date=20081110"
FT /controlled_curation="term=species distribution, conserved
Expand Down Expand Up @@ -77092,6 +77090,7 @@ FT /controlled_curation="term=warning, gene structure
FT updated; db_xref=PMID:28631610; date=20200501"
FT /primary_name="wtf1"
FT /product="wtf element (truncated) Wtf1"
FT /synonym="wts1"
FT /systematic_id="SPAC2E12.05"
FT /db_xref="PMID:28631610"
FT /db_xref="PMID:30991417"
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1 change: 1 addition & 0 deletions data/chromosome2.contig
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Original file line number Diff line number Diff line change
Expand Up @@ -8338,6 +8338,7 @@ FT /primary_name="wtf2"
FT /product="wtf element (with segmental deletion) Wtf2"
FT /pseudo
FT /synonym="SPBC1706.02"
FT /synonym="wts2"
FT /systematic_id="SPBC1706.02c"
FT /db_xref="PMID:28631610"
FT /db_xref="PMID:30991417"
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33 changes: 31 additions & 2 deletions data/chromosome3.contig
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Original file line number Diff line number Diff line change
Expand Up @@ -2890,6 +2890,7 @@ FT /product="pseudogene wtf element Wtf3 (no methionine)"
FT /pseudo
FT /synonym="meu9"
FT /synonym="SPCC548.02"
FT /synonym="wts0403b"
FT /systematic_id="SPCC548.02c"
FT /db_xref="PMID:28631610"
FT /db_xref="PMID:30991417"
Expand Down Expand Up @@ -2921,6 +2922,7 @@ FT /obsolete_name="wtf13"
FT /primary_name="wtf4"
FT /product="wtf meiotic drive poison Wtf4"
FT /synonym="SPCC548.03"
FT /synonym="wts0403a"
FT /db_xref="SPD:51/51D11"
FT /db_xref="PMID:28631610"
FT /db_xref="PMID:30991417"
Expand All @@ -2944,6 +2946,7 @@ FT /obsolete_name="wtf13"
FT /primary_name="wtf4"
FT /product="wtf meiotic drive antidote Wtf4"
FT /synonym="SPCC548.03"
FT /synonym="wts0403a"
FT /db_xref="SPD:51/51D11"
FT /db_xref="PMID:28631610"
FT /db_xref="PMID:30991417"
Expand Down Expand Up @@ -3227,6 +3230,7 @@ FT CDS join(243855..243993,244160..244405,244455..244760,244802..2
FT /obsolete_name="wtf4"
FT /primary_name="wtf5"
FT /product="wtf antidote-like meiotic drive suppressor Wtf5"
FT /synonym="wts5"
FT /db_xref="SPD:51/51C12"
FT /db_xref="PMID:28631610"
FT /db_xref="PMID:30991417"
Expand Down Expand Up @@ -3916,6 +3920,7 @@ FT updated; db_xref=PMID:28631610; date=20200501"
FT /controlled_curation="term=warning, gene structure
FT updated; db_xref=PMID:30991417; date=20200501"
FT /synonym="SPCC553.05"
FT /synonym="wts6"
FT /db_xref="SPD:51/51D01"
FT /db_xref="PMID:28631610"
FT /db_xref="PMID:30991417"
Expand Down Expand Up @@ -4176,6 +4181,7 @@ FT /product="non-coding RNA"
FT CDS join(320617..320755,320964..321335,321387..321523)
FT /primary_name="wtf7"
FT /product="wtf element Wtf7"
FT /synonym="wts7"
FT /db_xref="SPD:13/13G05"
FT /db_xref="PMID:28631610"
FT /db_xref="PMID:30991417"
Expand Down Expand Up @@ -5741,6 +5747,7 @@ FT updated; db_xref=PMID:30991417; date=20200501"
FT /obsolete_name="wtf3-pseudo"
FT /primary_name="wtf8"
FT /product="wtf element Wtf8 (frameshifted)"
FT /synonym="wts8"
FT /db_xref="SPD:51/51D12"
FT /db_xref="PMID:28631610"
FT /db_xref="PMID:32032353"
Expand Down Expand Up @@ -6672,6 +6679,7 @@ FT CDS join(487167..487305,487473..487718,487768..488046,488092..4
FT /obsolete_name="wtf2"
FT /primary_name="wtf9"
FT /product="wtf antidote-like meiotic drive suppressor Wtf9"
FT /synonym="wts9"
FT /db_xref="SPD:52/52B10"
FT /db_xref="PMID:32032353"
FT /colour=2
Expand Down Expand Up @@ -8531,6 +8539,7 @@ FT CDS join(615605..615743,615913..616158,616208..616480,616522..6
FT /primary_name="wtf10"
FT /product="wtf antidote-like meiotic drive suppressor
FT Wtf10"
FT /synonym="wts10"
FT /colour=2
FT /systematic_id="SPCC1183.10"
FT /controlled_curation="term=wtf element;
Expand Down Expand Up @@ -19297,6 +19306,7 @@ FT CDS join(1399379..1399535,1399698..1400018,1400066..1400296,140
FT /primary_name="wtf11"
FT /product="wtf element Wtf11"
FT /synonym="meu24"
FT /synonym="wts1112a"
FT /db_xref="SPD:17/17C01"
FT /db_xref="PMID:30991417"
FT /db_xref="PMID:32032353"
Expand Down Expand Up @@ -19333,6 +19343,7 @@ FT CDS join(1401530..1401668,1401900..1402172,1402221..1402448,140
FT /obsolete_name="SPCC1281.09"
FT /primary_name="wtf12"
FT /product="wtf element Wtf12 (truncated)"
FT /synonym="wts1112b"
FT /db_xref="SPD:52/52B01"
FT /db_xref="PMID:28631610"
FT /db_xref="PMID:30991417"
Expand Down Expand Up @@ -21692,6 +21703,7 @@ FT /db_xref="PMID:21511999"
FT CDS complement(join(1580123..1580268,1580319..1580381,1580422..1580613,1580650..1581006,1581055..1581337))
FT /primary_name="wtf13"
FT /product="wtf meiotic drive poison Wtf13"
FT /synonym="wts13"
FT /colour=2
FT /systematic_id="SPCC162.04c.2"
FT /controlled_curation="term=wtf element;
Expand All @@ -21718,6 +21730,7 @@ FT date=20200914"
FT CDS complement(join(1580123..1580268,1580319..1580381,1580422..1580613,1580650..1581006,1581055..1581327,1581559..1581694))
FT /primary_name="wtf13"
FT /product="wtf meiotic drive antidote Wtf13"
FT /synonym="wts13"
FT /colour=2
FT /systematic_id="SPCC162.04c.1"
FT /controlled_curation="term=wtf element;
Expand Down Expand Up @@ -22495,6 +22508,7 @@ FT score=61.354000; db_xref=PMID:30566651"
FT CDS join(1630438..1630567,1630639..1630863,1630913..1631164,1631205..1631267,1631331..1631350)
FT /primary_name="wtf14"
FT /product="wtf element Wtf14"
FT /synonym="wts1415a"
FT /db_xref="SPD:09/09H12"
FT /db_xref="PMID:30991417"
FT /db_xref="PMID:32032353"
Expand Down Expand Up @@ -22529,6 +22543,7 @@ FT /controlled_curation="term=species distribution,
FT Schizosaccharomyces pombe specific; date=20140820"
FT /primary_name="wtf15"
FT /product="wtf element Wtf15"
FT /synonym="wts1415b"
FT /colour=2
FT /systematic_id="SPCC663.17"
FT /db_xref="PMID:30991417"
Expand Down Expand Up @@ -23124,8 +23139,8 @@ FT /colour=2
FT /primary_name="mug27"
FT /synonym="ppk35"
FT /synonym="slk1"
FT /product="meiosis specific serine/threonine protein kinase
FT (NDR family) Mug27/Slk1"
FT /product="meiosis specific Sid2-related serine/threonine
FT protein kinase (NDR family) Mug27/Slk1"
FT /db_xref="SPD:27/27B04"
FT /systematic_id="SPCC417.06c"
FT /controlled_curation="term=Ndr kinase/myotonic dystrophy
Expand Down Expand Up @@ -23162,6 +23177,8 @@ FT /controlled_curation="term=gene expression, protein level;
FT annotation_extension=during(GO:0007127);
FT qualifier=present; evidence=ECO:0000006;
FT db_xref=PMID:18411246; date=20080416"
FT /controlled_curation="term=Sid2-Like Kinase;
FT db_xref=PMID:18562696; date=20240828"
FT 3'UTR complement(1679761..1679923)
FT /systematic_id="SPCC417.07c"
FT /db_xref="PMID:21511999"
Expand Down Expand Up @@ -24040,6 +24057,7 @@ FT CDS complement(join(1739338..1739444,1739495..1739557,1739598..
FT /primary_name="wtf16"
FT /product="wtf antidote-like meiotic drive suppressor
FT Wtf16"
FT /synonym="wts16"
FT /db_xref="SPD:51/51F04"
FT /db_xref="PMID:30991417"
FT /db_xref="PMID:32032353"
Expand Down Expand Up @@ -25044,6 +25062,7 @@ FT /controlled_curation="term=warning, gene structure
FT updated; db_xref=PMID:30991417; date=20200501"
FT /primary_name="wtf17"
FT /product="wtf element Wtf17 (no initiator methionine)"
FT /synonym="wts1817b"
FT /systematic_id="SPCC285.06c"
FT /db_xref="PMID:28631610"
FT /db_xref="PMID:32032353"
Expand Down Expand Up @@ -25071,6 +25090,7 @@ FT updated; db_xref=PMID:30475921; date=20200501"
FT /primary_name="wtf18"
FT /product="wtf antidote-like meiotic drive suppressor
FT Wtf18"
FT /synonym="wts1817a"
FT /obsolete_name="wtf5"
FT /colour=2
FT /systematic_id="SPCC285.07c"
Expand Down Expand Up @@ -27772,6 +27792,7 @@ FT /product="non-coding RNA"
FT CDS join(2017717..2017852,2018068..2018397,2018447..2018824,2018861..2019052,2019093..2019155,2019206..2019288)
FT /primary_name="wtf19"
FT /product="wtf meiotic drive antidote Wtf19"
FT /synonym="wts1920a"
FT /db_xref="SPD:45/45B08"
FT /db_xref="PMID:32032353"
FT /colour=2
Expand All @@ -27790,6 +27811,7 @@ FT /db_xref="PMID:27856494"
FT CDS join(2018097..2018397,2018447..2018824,2018861..2019052,2019093..2019155,2019206..2019288)
FT /primary_name="wtf19"
FT /product="wtf meiotic drive poison Wtf19"
FT /synonym="wts1920a"
FT /colour=2
FT /systematic_id="SPCC1906.03.2"
FT /controlled_curation="term=wtf element;
Expand Down Expand Up @@ -27849,6 +27871,7 @@ FT CDS join(2020201..2020339,2020578..2020850,2020899..2021132,202
FT /primary_name="wtf20"
FT /product="wtf antidote-like meiotic drive suppressor
FT Wtf20"
FT /synonym="wts1920b"
FT /colour=2
FT /systematic_id="SPCC1906.04"
FT /controlled_curation="term=wtf element;
Expand Down Expand Up @@ -28406,6 +28429,7 @@ FT CDS join(2064452..2064590,2064758..2065003,2065051..2065296,206
FT /obsolete_name="wtf3"
FT /primary_name="wtf21"
FT /product="wtf meiotic drive antidote-like Wtf21"
FT /synonym="wts21"
FT /db_xref="SPD:51/51D06"
FT /db_xref="PMID:30991417"
FT /db_xref="PMID:32032353"
Expand Down Expand Up @@ -29076,6 +29100,7 @@ FT /controlled_curation="term=warning, gene structure
FT updated; db_xref=PMID:28631610; date=20200501"
FT /primary_name="wtf22"
FT /product="wtf element Wtf22 (frameshifted)"
FT /synonym="wts22"
FT /pseudo
FT /systematic_id="SPCC576.16c"
FT /db_xref="PMID:28631610"
Expand Down Expand Up @@ -29682,6 +29707,7 @@ FT CDS join(2145761..2145896,2146113..2146442,2146492..2146770,214
FT /obsolete_name="wtf10"
FT /primary_name="wtf23"
FT /product="wtf meiotic drive antidote Wtf23"
FT /synonym="wts23"
FT /db_xref="SPD:24/24C07"
FT /db_xref="PMID:30991417"
FT /db_xref="PMID:32032353"
Expand All @@ -29704,6 +29730,7 @@ FT /db_xref="PMID:27856494"
FT CDS join(2146142..2146442,2146492..2146770,2146807..2146998,2147039..2147101,2147152..2147258)
FT /primary_name="wtf23"
FT /product="wtf meiotic drive poison Wtf23"
FT /synonym="wts23"
FT /colour=2
FT /systematic_id="SPCC1620.02.2"
FT /controlled_curation="term=wtf element;
Expand Down Expand Up @@ -30178,6 +30205,7 @@ FT /controlled_curation="term=warning, gene structure
FT updated; db_xref=PMID:30991417; date=20200501"
FT /primary_name="wtf24"
FT /product="wtf element Wtf24 (frameshifted)"
FT /synonym="wts24"
FT /pseudo
FT /db_xref="SPD:22/22F03"
FT /db_xref="PMID:28631610"
Expand Down Expand Up @@ -30680,6 +30708,7 @@ FT CDS complement(join(2219127..2219203,2219264..2219317,2219358..
FT /primary_name="wtf25"
FT /product="wtf antidote-like meiotic drive suppressor
FT Wtf25"
FT /synonym="wts25"
FT /db_xref="SPD:51/51C11"
FT /db_xref="PMID:30991417"
FT /db_xref="PMID:32032353"
Expand Down
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