Add script for running and processing InterProScan

Set up InterProScan, run it then process the results with
pombase-domain-process.

Refs pombase/pombase-chado#1218

etc/run_and_process_interpro.sh

@@ -0,0 +1,18 @@
+#!/bin/sh -
+
+# Usage:
+#   cd <interproscan_directory>
+#   run_and_process_interpro.sh
+
+python3 setup.py -f interproscan.properties
+
+perl -pne 's/(precalculated.match.lookup.service.proxy.(host|port)=).*/$1/' interproscan.properties > interproscan.properties.new &&
+    mv interproscan.properties.new interproscan.properties
+
+curl https://curation.pombase.org/dumps/latest_build/fasta/feature_sequences/peptide.fa.gz |
+    gzip -d | perl -pne 's/\*$//' | perl -pne 's/\*/X/g' > pombe_peptide.fa
+
+PATH=/usr/local/jdk-14.0.1/bin:$PATH nice -19 ./interproscan.sh -i pombe_peptide.fa -f json
+
+PATH=/usr/local/tmhmm-2.0c/bin:$PATH nice -19 /var/pomcur/bin/pombase-domain-process -p pombe_peptide.fa \
+   -i pombe_peptide.fa.json -o domain_out.json