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Update browser-data-hosting.md
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ValWood authored Dec 10, 2024
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| Column | Contents (Example) | |
|----------|---------------------------------------------------------------------------------------------|-----------|
| 1 (A) | Data type (*Mandatory*): e.g Transcripts, Chromatin binding, Nucleosome positioning, Poly(A) sites, Replication origins) | |
| 2 (B) | Track label (*Mandatory*: See below for format and examples***) | |
| 1 (A) | Data type (*Mandatory*): i.e. Transcripts, Chromatin binding, Nucleosome positioning, Poly(A) sites, Replication origins) | |
| 2 (B) | Track label (*Mandatory*): See below for format and examples*** | |
| 3 (C) | Assayed gene product (Fkh2) | |
| 4 (D) | Strain background (*Mandatory*: h- cdc25-22, leu1-1; Multiple entries allowed) | |
| 5 (E) | WT or mutant (*Mandatory*: WT; strains with only background mutations are considered WT) | |
| 6 (F) | Mutant alleles (clr4delta, dfp1-3A; Multiple entries allowed) | |
| 7 (G) | Conditions (YES, high temperature; glucose MM, standard temperature + HU) | |
| 8 (H) | Comment (Free-text field for additional information; Multiple entries allowed) | |
| 9 (I) | Growth phase or response (*Mandatory*: Vegetative growth, meiosis, quiescence, glucose starvation, oxidative stress, heat shock; Multiple entries allowed if the track combines data) | |
| 4 (D) | Strain background (*Mandatory*) i.e. h- cdc25-22, leu1-1; Multiple entries allowed) | |
| 5 (E) | WT or mutant (*Mandatory*): (strains with only background mutations are considered WT) | |
| 6 (F) | Mutant alleles i.e. clr4delta, dfp1-3A; (Multiple entries allowed) | |
| 7 (G) | Conditions i.e. YES, high temperature; glucose MM, standard temperature + HU | |
| 8 (H) | Comment Free-text field for additional information; (Multiple entries allowed) | |
| 9 (I) | Growth phase or response (*Mandatory*): i.e. Vegetative growth, meiosis, quiescence, glucose starvation, oxidative stress, heat shock; Multiple entries allowed if the track combines data | |
| 10 (J) | Strand (Forward, reverse) | |
| 11 (K) | Assay type (*Mandatory*: Tiling microarray, RNA-seq, HT sequencing) | |
| 12 (L) | First author (surname) (*Mandatory*) | |
| 11 (K) | Assay type (*Mandatory*): i.e. Tiling microarray, RNA-seq, HT sequencing | |
| 12 (L) | First author surname (*Mandatory*) | |
| 13 (M) | Publication year (*Mandatory*) | |
| 14 (N) | PubMed ID (*Mandatory*) | |
| 15 (O) | Database (GEO, ArrayExpress) | |
| 16 (P) | Study ID (GSE110976, PRJEB7403) | |
| 17 (Q) | Sample ID (GSM3019628, ERS555567; Multiple entries allowed) | |
| 18 (R) | Data file type (*Mandatory*: bigwig, bed) | |
| 19 (S) | File name (*Mandatory*: Name given to submitted data file relevant to the track) | |
| 15 (O) | Database i.e. GEO, ArrayExpress | |
| 16 (P) | Study ID i.e. GSE110976, PRJEB7403 | |
| 17 (Q) | Sample ID i.e. GSM3019628, ERS555567; Multiple entries allowed | |
| 18 (R) | Data file type (*Mandatory*): i.e. bigwig, bed) | |
| 19 (S) | File name (*Mandatory*): Name given to submitted data file relevant to the track | |

* Format for track label “Assayed gene product” “Data type” “in mutant” “during Growth phase or response” “additional experimental detail of importance (Conditions, Strain background)” “; repeat” “(strand)” “- First author (Publication year)”

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