Show attribution for HTP datasets

Refs #525 See also pombase/pombase-chado#564 See also pombase/pombase-chado#886
pombase · Oct 17, 2023 · af30f97 · af30f97
1 parent 540e83b
commit af30f97
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Showing 4 changed files with 43 additions and 4 deletions.
diff --git a/src/app/config.ts b/src/app/config.ts
@@ -264,6 +264,7 @@ export interface AppConfig {
   };
   helpdesk_address: string;
   show_names_of_staff_curators: boolean;
+  show_names_of_staff_file_curators: boolean;
   gene_systematic_identifier_re: string;
   transcript_systematic_identifier_re: string;
   details_popup_delay: number;
@@ -742,6 +743,7 @@ let _appConfig: AppConfig = {
   footer: pombaseConfig.footer,
   helpdesk_address: pombaseConfig.helpdesk_address,
   show_names_of_staff_curators: pombaseConfig.show_names_of_staff_curators,
+  show_names_of_staff_file_curators: pombaseConfig.show_names_of_staff_file_curators,
   gene_systematic_identifier_re: pombaseConfig.gene_systematic_identifier_re,
   transcript_systematic_identifier_re: pombaseConfig.transcript_systematic_identifier_re,
   details_popup_delay: pombaseConfig.details_popup_delay,

diff --git a/src/app/pombase-api.service.ts b/src/app/pombase-api.service.ts
@@ -662,6 +662,9 @@ export class ReferenceDetails {
   canto_curator_name: string;
   canto_approved_date: string;
   annotation_curators: Array<AnnotationCurator>;
+  file_curator_role: string;
+  file_curator_name: string;
+  annotation_file_curators: Array<AnnotationCurator>;
   approved_date: string;
   canto_session_submitted_date: string;
   publication_year: string;

diff --git a/src/app/reference-details/reference-details.component.html b/src/app/reference-details/reference-details.component.html
@@ -35,9 +35,12 @@
               Curation by {{curator.name}}
             </div>
           </div>
-          <div class="ref-curated-by" *ngIf="hasStaffCurator && !this.appConfig.show_names_of_staff_curators">
+          <div class="ref-curated-by" *ngIf="onlyStaffCurator && !this.appConfig.show_names_of_staff_curators">
             Curated by {{siteName}} staff
           </div>
+          <div class="ref-curated-by" *ngIf="communityFileCuratorNames">
+            High-throughput dataset provided by {{communityFileCuratorNames}}
+          </div>
           <div *ngIf="hasApprovedSession()">
             Added to {{siteName}} on <span class="approved-date">{{refDetails.approved_date}}</span>
           </div>

diff --git a/src/app/reference-details/reference-details.component.ts b/src/app/reference-details/reference-details.component.ts
@@ -27,7 +27,8 @@ export class ReferenceDetailsComponent implements OnInit {
   pubMedId?: string;
   apiError?: APIError;
   cantoCuratorName?: string;
-  hasStaffCurator = false;
+  onlyStaffCurator = false;
+  onlyStaffFileCurator = false;
   cantoTriageStatus = 'UNKNOWN';
 
   multiOrgMode = getAppConfig().isMultiOrganismMode();
@@ -38,7 +39,10 @@ export class ReferenceDetailsComponent implements OnInit {
   doiUrl?: string;
 
   communityCuratorNames?: string;
+  communityFileCuratorNames?: string;
+
   adminCuratorList: Array<AnnotationCurator> = [];
+  adminFileCuratorList: Array<AnnotationCurator> = [];
 
   externalLinks?: Array<DetailsPageLinkConfig>;
 
@@ -69,7 +73,7 @@ export class ReferenceDetailsComponent implements OnInit {
 
     this.cantoTriageStatus = this.refDetails.canto_triage_status;
 
-    this.hasStaffCurator = true;
+    this.onlyStaffCurator = true;
 
     this.communityCuratorNames = undefined;
     this.adminCuratorList = [];
@@ -79,7 +83,7 @@ export class ReferenceDetailsComponent implements OnInit {
     for (const curator of this.refDetails.annotation_curators) {
       if (curator.community_curator) {
         communityCuratorList.push(curator.name);
-        this.hasStaffCurator = false
+        this.onlyStaffCurator = false
       } else {
         if (this.appConfig.show_names_of_staff_curators) {
           this.adminCuratorList.push(curator);
@@ -95,6 +99,33 @@ export class ReferenceDetailsComponent implements OnInit {
         this.communityCuratorNames = communityCuratorList.join(', ') + ' and ' + lastName;
       }
     }
+
+    this.onlyStaffFileCurator = true;
+
+    this.communityFileCuratorNames = undefined;
+    this.adminFileCuratorList = [];
+
+    let communityFileCuratorList = [];
+
+    for (const curator of this.refDetails.annotation_file_curators) {
+      if (curator.community_curator) {
+        communityFileCuratorList.push(curator.name);
+        this.onlyStaffFileCurator = false
+      } else {
+        if (this.appConfig.show_names_of_staff_file_curators) {
+          this.adminFileCuratorList.push(curator);
+        }
+      }
+    }
+
+    if (communityFileCuratorList.length == 1) {
+      this.communityFileCuratorNames = communityFileCuratorList[0];
+    } else {
+      if (communityFileCuratorList.length > 1) {
+        const lastName = communityFileCuratorList.pop();
+        this.communityFileCuratorNames = communityFileCuratorList.join(', ') + ' and ' + lastName;
+      }
+    }
   }
 
   hasGenes(): boolean {