Create 2023_Rodriguez_Varela.janno

[Helsinki-Ronan]

.janno file for future use.

Rodríguez-Varela et al. 2023	Cell	The genetic history of Scandinavia from the Roman Iron Age to the present	2023	https://doi.org/10.1016/j.cell.2022.11.024

[nevrome]

Thanks for preparing this .janno file! I see the following issues

• The package name does not follow our expected standard of Year_AuthorName_RelevantKeyword. I propose 2023_RodriguezVarela_Scandinavia.
• Please remove all columns that are completely empty/filled only with n/a.
• The Genetic_Sex must be one of F, M or U.
• If Contamination and Contamination_Err are empty then Contamination_Meas must be empty as well.
• Date_Type must be C14, not c14.
• If Date_Type == C14, then Date_C14_Uncal_BP and Date_C14_Uncal_BP_Err can not be empty.
• The Source_Tissue ancient_human_skeletal_element is not very informative. If the paper does not specify further, e.g. by distinguishing bone or teeth, then I suggest to leave the column empty and remove it.
• The note reads Data are a mix of UDG-treated and untreated libraries. Cannot find information as to which libraries are UDG-half or UDG-full Setting udg to “minus”. @TCLamnidis

Maybe you could quickly have a look 👍. Please run trident validate --janno on the file after you implemented the necessary changes.

[TCLamnidis]

I renamed the janno file, but cannot rename the directory on GH. @Helsinki-Ronan , maybe you could rename the directory on your fork to 2023_RodriguezVarela_Scandinavia?

[stschiff]

@Helsinki-Ronan could you perhaps reach out to Anders or the first author of this paper and ask them for the genotype data for this package? We would like author-made genotype data for this repository, not the one from AADR. Thanks!

[Helsinki-Ronan]

@TCLamnidis I just synced my fork with yours (Poseidon's) and the package appears as 2023_RodriguezVarela_Scandinavia so I guess you renamed it yourself?

@stschiff I'm not sure what you mean. The data is from ENA, not from AADR. Or do they both point to the same thing?

[TCLamnidis]

@Helsinki-Ronan The files I could rename, but not the directory