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| @ARTICLE{2022KennettNatureCommunications, | ||
| title = "{South-to-north migration preceded the advent of intensive | ||
| farming in the Maya region}", | ||
| author = "Kennett, Douglas J and Lipson, Mark and Prufer, Keith M and | ||
| Mora-Marín, David and George, Richard J and Rohland, Nadin and | ||
| Robinson, Mark and Trask, Willa R and Edgar, Heather H J and | ||
| Hill, Ethan C and Ray, Erin E and Lynch, Paige and Moes, Emily | ||
| and O'Donnell, Lexi and Harper, Thomas K and Kate, Emily J and | ||
| Ramos, Josue and Morris, John and Gutierrez, Said M and Ryan, | ||
| Timothy M and Culleton, Brendan J and Awe, Jaime J and Reich, | ||
| David", | ||
| journal = "Nature Communications", | ||
| publisher = "Nature Publishing Group", | ||
| volume = 13, | ||
| number = 1, | ||
| pages = "1--10", | ||
| month = mar, | ||
| year = 2022, | ||
| url = "https://www.nature.com/articles/s41467-022-29158-y", | ||
| doi = "10.1038/s41467-022-29158-y", | ||
| issn = "2041-1723,2041-1723", | ||
| language = "en" | ||
| } |
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| Mayahak_Cab_Pek I13267_MNT 0 0 2 0 | ||
| Mayahak_Cab_Pek I13268_MNT 0 0 1 0 | ||
| Mayahak_Cab_Pek I13268_ss_MNT 0 0 1 0 | ||
| Mayahak_Cab_Pek I19167_ss_MNT 0 0 1 0 | ||
| Mayahak_Cab_Pek I19169_ss_MNT 0 0 1 0 | ||
| Mayahak_Cab_Pek I19170_ss_MNT 0 0 2 0 | ||
| Saki_Tzul I19942_ss_MNT 0 0 2 0 | ||
| Saki_Tzul I19944_ss_MNT 0 0 1 0 | ||
| Saki_Tzul I19950_ss_MNT 0 0 1 0 | ||
| Mayahak_Cab_Pek I20428_ss_MNT 0 0 1 0 | ||
| Mayahak_Cab_Pek I24540_MNT 0 0 2 0 | ||
| Mayahak_Cab_Pek I24541_MNT 0 0 1 0 | ||
| Mayahak_Cab_Pek I24542_MNT 0 0 2 0 | ||
| Unknown I3422_MNT 0 0 0 0 | ||
| Mayahak_Cab_Pek I3442_MNT 0 0 1 0 | ||
| Mayahak_Cab_Pek I5454_MNT 0 0 1 0 | ||
| Mayahak_Cab_Pek I5455_MNT 0 0 1 0 | ||
| Mayahak_Cab_Pek I6235_MNT 0 0 1 0 | ||
| Saki_Tzul I6236_MNT 0 0 2 0 | ||
| Mayahak_Cab_Pek I7543_MNT 0 0 1 0 | ||
| Mayahak_Cab_Pek I7543_ss_MNT 0 0 1 0 | ||
| Mayahak_Cab_Pek I7544_MNT 0 0 2 0 | ||
| Mayahak_Cab_Pek I8041_MNT 0 0 1 0 |
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| Poseidon_ID Genetic_Sex Group_Name Relation_To Relation_Degree Relation_Note Collection_ID Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_Note MT_Haplogroup Y_Haplogroup Source_Tissue Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Nr_SNPs Damage Contamination Contamination_Err Contamination_Meas Contamination_Note Genetic_Source_Accession_IDs Publication Eager_ID Main_ID RateErrX RateErrY RateX RateY | ||
| I13267_MNT F Mayahak_Cab_Pek n/a n/a n/a MHCP.17.1.7 Belize BZ Bladen Nature Reserve Mayahak Cab Pek 16.49 88.91 C14 PSUAMS-3607;UCIAMS-228026 4725;4775 25;45 n/a C1c n/a bone_petrous 2 I13267.mt;I13267.1240k OtherCapture half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 778420 0.232728729768832 0.220769 2.003269e-12 ANGSD[v0.935] Nr Snps (per library): 0;7581. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB49391;ERS9293359;ERR7735786;ERR7735765 2022KennettNatureCommunications I13267 I13267 0.0027175168019670003 0.00028348542545400003 0.76262810751771 0.005633710837733 | ||
| I13268_MNT M Mayahak_Cab_Pek n/a n/a n/a MHCP.17.1.8 Belize BZ Bladen Nature Reserve Mayahak Cab Pek 16.49 88.91 C14 PSUAMS-4290 8565 45 enamel carbonate C1b Q1a2a1a1 bone_petrous 1 I13268.mt OtherCapture half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 0 0.418141592920354 n/a n/a n/a Nr Snps (per library): 0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB49391;ERS9293354;ERR7735781 2022KennettNatureCommunications I13268 I13268 0.0 0.0 0.0 0.0 | ||
| I13268_ss_MNT M Mayahak_Cab_Pek n/a n/a n/a MHCP.17.1.8 Belize BZ Bladen Nature Reserve Mayahak Cab Pek 16.49 88.91 C14 PSUAMS-4290 8565 45 enamel carbonate C1b Q1a2a1a1 bone_petrous 1 I13268.1240k OtherCapture half ss haploid https://github.com/nf-core/eager/releases/tag/2.5.1 108154 0.461117201393457 n/a n/a n/a Nr Snps (per library): 78. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB49391;ERS9293354;ERR7735760 2022KennettNatureCommunications I13268_ss I13268 0.007424654484514 0.009530526384593 0.44159656188260704 0.480819781223132 | ||
| I19167_ss_MNT M Mayahak_Cab_Pek n/a n/a n/a MHCP.17.2.11a Belize BZ Bladen Nature Reserve Mayahak Cab Pek 16.49 88.91 C14 PSUAMS-4582 4330 20 n/a n/a n/a bone_petrous 2 I19167.mt;I19167.1240k OtherCapture half ss haploid https://github.com/nf-core/eager/releases/tag/2.5.1 22739 0.45807954833289666 n/a n/a n/a Nr Snps (per library): 0;9. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB49391;ERS9293363;ERR7735790;ERR7735769 2022KennettNatureCommunications I19167_ss I19167 0.016367992913651 0.022926497382377002 0.42696625576615205 0.5521000917133151 | ||
| I19169_ss_MNT M Mayahak_Cab_Pek I19170_ss_MNT first n/a MHCP.17.1.c1 Belize BZ Bladen Nature Reserve Mayahak Cab Pek 16.49 88.91 C14 PSUAMS-4800 7900 35 n/a D4h3a n/a bone_petrous 2 I19169.1240k;I19169.mt OtherCapture half ss haploid https://github.com/nf-core/eager/releases/tag/2.5.1 46914 0.4282981558767512 n/a n/a n/a Nr Snps (per library): 11;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB49391;ERS9293355;ERR7735761;ERR7735782 2022KennettNatureCommunications I19169_ss I19169 0.011195078578139001 0.014254652187201 0.42101226124024205 0.451037252592052 | ||
| I19170_ss_MNT F Mayahak_Cab_Pek I19169_ss_MNT first n/a MHCP.17.1.1b Belize BZ Bladen Nature Reserve Mayahak Cab Pek 16.49 88.91 n/a n/a n/a n/a Undated, but first-degree relative of I19169 D4h3a5 n/a bone_petrous 2 I19170.1240k;I19170.mt OtherCapture half ss haploid https://github.com/nf-core/eager/releases/tag/2.5.1 46551 0.45462536537462594 n/a n/a n/a Nr Snps (per library): 53;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB49391;ERS9293356;ERR7735762;ERR7735783 2022KennettNatureCommunications I19170_ss I19170 0.016136994740014 0.0020213914537310002 0.8457168187217771 0.009038777630107001 | ||
| I19942_ss_MNT F Saki_Tzul n/a n/a n/a ST.18.11.8 Belize BZ Bladen Nature Reserve Saki Tzul 16.49 88.91 C14 PSUAMS-5896 4390 20 n/a C1c n/a bone_petrous 2 I19942.1240k;I19942.mt OtherCapture half ss haploid https://github.com/nf-core/eager/releases/tag/2.5.1 86156 0.3976838299505098 0.154777 3.353719e-15 ANGSD[v0.935] Nr Snps (per library): 147;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB49391;ERS9293362;ERR7735768;ERR7735789 2022KennettNatureCommunications I19942_ss I19942 0.010989461693872 0.0007275264807440001 0.772855490928931 0.0023005656022540002 | ||
| I19944_ss_MNT M Saki_Tzul n/a n/a n/a ST.18.11.9 Belize BZ Bladen Nature Reserve Saki Tzul 16.49 88.91 C14 PSUAMS-5879 4300 30 n/a C1c Q1a2a bone_petrous 2 I19944.1240k;I19944.mt OtherCapture half ss haploid https://github.com/nf-core/eager/releases/tag/2.5.1 47685 0.4192054760422649 n/a n/a n/a Nr Snps (per library): 12;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB49391;ERS9293364;ERR7735770;ERR7735791 2022KennettNatureCommunications I19944_ss I19944 0.010047336292098 0.012348639603561001 0.37281265254226204 0.372184100087229 | ||
| I19950_ss_MNT M Saki_Tzul n/a n/a n/a ST.17.7.14 Belize BZ Bladen Nature Reserve Saki Tzul 16.49 88.91 C14 PSUAMS-5172 4125 30 associated charcoal D4h3a5 Q1a2a1a1 bone_petrous 2 I19950.1240k;I19950.mt OtherCapture half ss haploid https://github.com/nf-core/eager/releases/tag/2.5.1 510230 0.2956663603885621 0.004544 6.312403e-15 ANGSD[v0.935] Nr Snps (per library): 2355;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB49391;ERS9293367;ERR7735773;ERR7735794 2022KennettNatureCommunications I19950_ss I19950 0.0023195152305030002 0.0034253594047150004 0.375118033775988 0.5381932347485301 | ||
| I20428_ss_MNT M Mayahak_Cab_Pek n/a n/a n/a MHCP.14.1.a5 Belize BZ Bladen Nature Reserve Mayahak Cab Pek 16.49 88.91 C14 PSUAMS-6381 6090 25 associated charcoal D n/a bone_petrous 2 I20428.1240k;I20428.mt OtherCapture half ss haploid https://github.com/nf-core/eager/releases/tag/2.5.1 57537 0.44637616925274776 n/a n/a n/a Nr Snps (per library): 18;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB49391;ERS9293357;ERR7735763;ERR7735784 2022KennettNatureCommunications I20428_ss I20428 0.009689788079390001 0.01333129822432 0.39055876392820604 0.48736893750587607 | ||
| I24540_MNT F Mayahak_Cab_Pek n/a n/a n/a MHCP.19.12.18 Belize BZ Bladen Nature Reserve Mayahak Cab Pek 16.49 88.91 C14 PSUAMS-7428 4875 25 associated charcoal C n/a bone_petrous 2 I24540.1240k;I24540.mt OtherCapture half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 332108 0.25230876160923055 0.164347 5.615954e-14 ANGSD[v0.935] Nr Snps (per library): 1218;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB49391;ERS9293358;ERR7735764;ERR7735785 2022KennettNatureCommunications I24540 I24540 0.005941580798876 0.00071478558807 0.710631010852774 0.006966179240749001 | ||
| I24541_MNT M Mayahak_Cab_Pek n/a n/a n/a MHCP.19.12.17 Belize BZ Bladen Nature Reserve Mayahak Cab Pek 16.49 88.91 C14 PSUAMS-8121 10165 50 associated charcoal n/a n/a bone_petrous 2 I24541.1240k;I24541.mt OtherCapture half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 2667 0.29096522700982635 n/a n/a n/a Nr Snps (per library): 0;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB49391;ERS9293353;ERR7735759;ERR7735780 2022KennettNatureCommunications I24541 I24541 0.05103733054937801 0.07883052490169301 0.291359378412651 0.45670544055538104 | ||
| I24542_MNT F Mayahak_Cab_Pek n/a n/a n/a MHCP.19.12.10 Belize BZ Bladen Nature Reserve Mayahak Cab Pek 16.49 88.91 C14 PSUAMS-7434 4195 25 associated charcoal C1c n/a bone_petrous 2 I24542.mt;I24542.1240k OtherCapture half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 628663 0.21075627761597474 0.187255 6.388017e-13 ANGSD[v0.935] Nr Snps (per library): 0;4721. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB49391;ERS9293366;ERR7735793;ERR7735772 2022KennettNatureCommunications I24542 I24542 0.0033525615906750002 0.00036225406984000005 0.716734571954558 0.005669716740438001 | ||
| I3422_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 I3442.mt OtherCapture half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 0 0.149861878453039 n/a n/a n/a Nr Snps (per library): 0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB49391;ERS9293361;ERR7735788 2022KennettNatureCommunications I3422 I3422 0.0 0.0 0.0 0.0 | ||
| I3442_MNT M Mayahak_Cab_Pek n/a n/a n/a MHCP.14.1.5a Belize BZ Bladen Nature Reserve Mayahak Cab Pek 16.49 88.91 C14 PSUAMS-1402 4415 25 n/a A2 Q1a2a1a1 bone_petrous 2 I3442.1240k;I3442_all.1240k OtherCapture half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 1031049 0.2596711248657115 0.012772 1.7661126500000004e-13 ANGSD[v0.935] Nr Snps (per library): 7185;9810. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB49391;ERS9293361;ERR7735767;ERR7735779 2022KennettNatureCommunications I3442 I3442 0.0009502020668760001 0.0013141380863180001 0.42617566134621204 0.537454481762157 | ||
| I5454_MNT M Mayahak_Cab_Pek n/a n/a n/a MHCP.14.1.1 Belize BZ Bladen Nature Reserve Mayahak Cab Pek 16.49 88.91 C14 PSUAMS-2333 4430 20 n/a A2q Q1a2a1a1 bone_petrous 2 I5454.mt;I5454.1240k OtherCapture half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 653476 0.22011219213753763 0.006288 7.631344e-15 ANGSD[v0.935] Nr Snps (per library): 0;2338. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB49391;ERS9293360;ERR7735787;ERR7735766 2022KennettNatureCommunications I5454 I5454 0.002540898548954 0.0035255443742540004 0.399884165607206 0.507451889272863 | ||
| I5455_MNT M Mayahak_Cab_Pek n/a n/a n/a MHCP.14.2.4a Belize BZ Bladen Nature Reserve Mayahak Cab Pek 16.49 88.91 C14 UCIAMS-186360 4005 20 n/a C1c Q1a2a1a1 bone_petrous 2 I5455.mt;I5455.1240k OtherCapture half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 770808 0.20799515504585195 0.010075 1.27581e-14 ANGSD[v0.935] Nr Snps (per library): 0;4163. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB49391;ERS9293370;ERR7735797;ERR7735776 2022KennettNatureCommunications I5455 I5455 0.001992944158201 0.0027840572516370002 0.40577041495764404 0.521870435557867 | ||
| I6235_MNT M Mayahak_Cab_Pek I6236_MNT second Described as second/third degree in publication. MHCP.14.1.2a Belize BZ Bladen Nature Reserve Mayahak Cab Pek 16.49 88.91 C14 PSUAMS-1401 4050 30 n/a A2+(64)+@16111 Q1a2a1a1 bone_petrous 2 I6235.1240k;I6235.mt OtherCapture half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 785721 0.19601622278892755 0.007254 5.081764e-14 ANGSD[v0.935] Nr Snps (per library): 4110;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB49391;ERS9293368;ERR7735774;ERR7735795 2022KennettNatureCommunications I6235 I6235 0.001776686130726 0.0024899820552310003 0.372952238486206 0.48262752397753206 | ||
| I6236_MNT F Saki_Tzul I6235_MNT second Described as second/third degree in publication. ST.16.1.1 Belize BZ Bladen Nature Reserve Saki Tzul 16.49 88.91 C14 PSUAMS-1403 4025 25 n/a C1c n/a bone_petrous 2 I6236.mt;I6236.1240k OtherCapture half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 852786 0.14737310993427039 0.248068 3.454863e-14 ANGSD[v0.935] Nr Snps (per library): 0;9169. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB49391;ERS9293369;ERR7735796;ERR7735775 2022KennettNatureCommunications I6236 I6236 0.002076795398914 0.00019118942399800001 0.7760150559139981 0.004467171704906001 | ||
| I7543_MNT M Mayahak_Cab_Pek n/a n/a n/a MHCP.98.34.3a Belize BZ Bladen Nature Reserve Mayahak Cab Pek 16.49 88.91 C14 PSUAMS-4292 3565 20 n/a C1c n/a bone_petrous 1 I7543.mt OtherCapture half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 0 0.362116991643454 n/a n/a n/a Nr Snps (per library): 0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB49391;ERS9293372;ERR7735799 2022KennettNatureCommunications I7543 I7543 0.0 0.0 0.0 0.0 | ||
| I7543_ss_MNT M Mayahak_Cab_Pek n/a n/a n/a MHCP.98.34.3a Belize BZ Bladen Nature Reserve Mayahak Cab Pek 16.49 88.91 C14 PSUAMS-4292 3565 20 enamel carbonate n/a n/a bone_petrous 1 I7543.1240k OtherCapture half ss haploid https://github.com/nf-core/eager/releases/tag/2.5.1 72433 0.36127843331408 n/a n/a n/a Nr Snps (per library): 37. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB49391;ERS9293372;ERR7735778 2022KennettNatureCommunications I7543_ss I7543 0.008786061456223 0.011759748503288 0.407408056358016 0.48158552250766506 | ||
| I7544_MNT F Mayahak_Cab_Pek n/a n/a n/a MHCP.98.34.4b Belize BZ Bladen Nature Reserve Mayahak Cab Pek 16.49 88.91 C14 UCIAMS-228020 4210 20 n/a C1c n/a bone_petrous 2 I7544.mt;I7544.1240k OtherCapture half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 697178 0.22927157784035643 0.210122 1.167854e-12 ANGSD[v0.935] Nr Snps (per library): 0;5547. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB49391;ERS9293365;ERR7735792;ERR7735771 2022KennettNatureCommunications I7544 I7544 0.0035764932355230004 0.000352999728059 0.837917192158189 0.005558606650098 | ||
| I8041_MNT M Mayahak_Cab_Pek n/a n/a n/a MHCP.14.2.4c Belize BZ Bladen Nature Reserve Mayahak Cab Pek 16.49 88.91 C14 PSUAMS-2681 3735 20 n/a A2+(64)+@16111 Q1a2a1a1 bone_ulna 2 I8041.1240k;I8041.mt OtherCapture half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 67870 0.17901956627724055 n/a n/a n/a Nr Snps (per library): 13;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB49391;ERS9293371;ERR7735777;ERR7735798 2022KennettNatureCommunications I8041 I8041 0.012438095679637001 0.015162255735294 0.44910110137360404 0.44162587319616703 |
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