Update config for renewed processing.

packages/2020_Nagele_Caribbean/2020_Nagele_Caribbean.config

@@ -1,6 +1,8 @@
 // Keep track of config versions
-config_template_version='0.2.0dev'
-package_config_version='0.2.0dev'
+minotaur_release='0.3.0dev' // The release tag of the poseidon-eager repository used for processing and config file retrieval
+config_template_version='0.3.0dev'
+package_config_version='0.3.0dev'
+minotaur_config_base="https://raw.githubusercontent.com/poseidon-framework/poseidon-eager/${minotaur_release}/conf"
 
 // This configuration file is designed to be a used with the nf-core/eager pipeline.
 //   Instead of having to specify all other configurations for the Minotaur pipeline
@@ -12,17 +14,17 @@ package_config_version='0.2.0dev'
 //  from processing with the Minotaur workflow processing from the contents of a
 //  single file.
 
-// Load configuration profiles
-includeConfig "../../conf/EVA_cluster.config" // Cluster-specific configurations for nf-core/eager execution at MPI-EVA
-includeConfig "../../conf/Minotaur.config"    // Default nf-core/eager parameters for Minotaur processing.
+// Load configuration profiles. They are loaded from the minotaur_config_base URL, main branch.
+includeConfig "${minotaur_config_base}/EVA_cluster.config" // Cluster-specific configurations for nf-core/eager execution at MPI-EVA
+includeConfig "${minotaur_config_base}/Minotaur.config"    // Default nf-core/eager parameters for Minotaur processing.
 
 // The following config file specifies BED files for on-target endogenous DNA calculation and mean coverage as well as pseudohaploid genotyping.
 // TODO: Select the appropriate config for the CaptureType of the package.
-includeConfig '../../conf/CaptureType_profiles/1240K.config'
+includeConfig "${minotaur_config_base}/CaptureType_profiles/1240K.config"
 
 params {
   // Keep track of config file versions used when processing
-  config_profile_description = "${config_profile_description}\nconfig_template_version: ${config_template_version}\npackage_config_version: ${package_config_version}"
+  config_profile_description = "${config_profile_description}\n - config_template_version: ${config_template_version}\n - package_config_version: ${package_config_version}"
   config_profile_contact     = "Thiseas C. Lamnidis (@TCLamnidis)"
 
   /*