Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

2021_Papac_CentralEurope #11

Draft
wants to merge 3 commits into
base: main
Choose a base branch
from
Draft
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
,dhananjaya_aththanayaka,bionb53,21.02.2024 22:56,file:///home/dhananjaya_aththanayaka/.config/libreoffice/4;
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

@93Boy please check the "Files changed" tab, then you can easily catch weird libra-office files like this one. Please remove.

I will leave it to @TCLamnidis to review the SSF file.

7 changes: 7 additions & 0 deletions packages/2020_Bongers_SouthPeru/Bongers_SouthPeru.ssf
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
sample_accession study_accession run_accession sample_alias poseidon_IDs udg library_built secondary_sample_accession first_public last_updated instrument_model library_layout library_source instrument_platform library_name library_strategy fastq_aspera fastq_bytes fastq_md5 fastq_ftp read_count submitted_ftp
SAMEA6661723 PRJEB37726 ERR4017943 UC12-20 UC12-20 half ds ERS4421182 2020-06-09 2020-04-11 HiSeq X Ten PAIRED GENOMIC ILLUMINA SC79-L1098 WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR401/003/ERR4017943/ERR4017943_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR401/003/ERR4017943/ERR4017943_2.fastq.gz 21442269968;25176456374 4ee354658dbb1763bbb7392cbeb40d97;cf2070b93fd83c8b2debb1b25de58aca ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/003/ERR4017943/ERR4017943_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/003/ERR4017943/ERR4017943_2.fastq.gz 335210217 ftp.sra.ebi.ac.uk/vol1/run/ERR401/ERR4017943/SC79_L1098_S1_L001_R1_001.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR401/ERR4017943/SC79_L1098_S1_L001_R2_001.fastq.gz
SAMEA6661722 PRJEB37726 ERR4017942 UC12-12 UC12-12 half ds ERS4421181 2020-06-09 2020-04-11 HiSeq X Ten PAIRED GENOMIC ILLUMINA SC79-L1101 WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR401/002/ERR4017942/ERR4017942_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR401/002/ERR4017942/ERR4017942_2.fastq.gz 18195979831;21200990407 818b384816f44c7b1879294fd37bd299;0d2e65636f7a46edf753df2e68dd8a5b ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/002/ERR4017942/ERR4017942_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/002/ERR4017942/ERR4017942_2.fastq.gz 285113997 ftp.sra.ebi.ac.uk/vol1/run/ERR401/ERR4017942/SC79_L1101_S1_L001_R1_001.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR401/ERR4017942/SC79_L1101_S1_L001_R2_001.fastq.gz
SAMEA6661727 PRJEB37726 ERR4017947 UC8-8173 UC8-8173 half ds ERS4421186 2020-06-09 2020-04-12 HiSeq X Ten PAIRED GENOMIC ILLUMINA SC79-L1095 WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR401/007/ERR4017947/ERR4017947_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR401/007/ERR4017947/ERR4017947_2.fastq.gz 16681617207;18401697583 213949033a5b35f2eb0d02dbcd04632b;b8768919aac31ebd655b5320537aadd3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/007/ERR4017947/ERR4017947_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/007/ERR4017947/ERR4017947_2.fastq.gz 257026318 ftp.sra.ebi.ac.uk/vol1/run/ERR401/ERR4017947/SC79-L1095_S1_L001_R1_001.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR401/ERR4017947/SC79-L1095_S1_L001_R2_001.fastq.gz
SAMEA6661725 PRJEB37726 ERR4017945 UC12-25 UC12-25 half ds ERS4421184 2020-06-09 2020-06-17 HiSeq X Ten PAIRED GENOMIC ILLUMINA SC79-L1097 WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR401/005/ERR4017945/ERR4017945_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR401/005/ERR4017945/ERR4017945_2.fastq.gz 22089128730;24651620181 0f837adfda221d2330b1262e74cdc070;492f30ce847b5fc6e5a1d16ddc208f0d ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/005/ERR4017945/ERR4017945_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/005/ERR4017945/ERR4017945_2.fastq.gz 346753602 ftp.sra.ebi.ac.uk/vol1/run/ERR401/ERR4017945/SC79_L1097_S1_L001_R1_001.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR401/ERR4017945/SC79_L1097_S1_L001_R2_001.fastq.gz
SAMEA6661724 PRJEB37726 ERR4017944 UC12-24 UC12-24 half ds ERS4421183 2020-06-09 2020-04-11 HiSeq X Ten PAIRED GENOMIC ILLUMINA SC79-L1096 WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR401/004/ERR4017944/ERR4017944_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR401/004/ERR4017944/ERR4017944_2.fastq.gz 18392091676;21164798356 8c7a2105a5d34c1160ea68cc6c459a7f;9365adbf8f8538a7a63631f1b3e56bda ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/004/ERR4017944/ERR4017944_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/004/ERR4017944/ERR4017944_2.fastq.gz 283637918 ftp.sra.ebi.ac.uk/vol1/run/ERR401/ERR4017944/SC79-L1096_S1_L001_R1_001.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR401/ERR4017944/SC79-L1096_S1_L001_R2_001.fastq.gz
SAMEA6661726 PRJEB37726 ERR4017946 UC8-8168 UC8-8168 half ds ERS4421185 2020-06-09 2020-04-12 HiSeq X Ten PAIRED GENOMIC ILLUMINA SC79-L1099 WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR401/006/ERR4017946/ERR4017946_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR401/006/ERR4017946/ERR4017946_2.fastq.gz 16428825487;18295596682 c931ada4db74d678bc82e71dad544556;e648c62aaad77dd722f482cfd6f68d0e ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/006/ERR4017946/ERR4017946_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/006/ERR4017946/ERR4017946_2.fastq.gz 255728754 ftp.sra.ebi.ac.uk/vol1/run/ERR401/ERR4017946/SC79_L1099_S1_L001_R1_001.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR401/ERR4017946/SC79_L1099_S1_L001_R2_001.fastq.gz
Loading
Loading