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nevrome committed Mar 19, 2024
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48 changes: 24 additions & 24 deletions references.bib
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@article{Rohrlach2023,
title = {BREADR: An R Package for the Bayesian Estimation of Genetic Relatedness from Low-coverage Genotype Data},
title = {{BREADR}: An {R} Package for the Bayesian Estimation of Genetic Relatedness from Low-coverage Genotype Data},
url = {http://dx.doi.org/10.1101/2023.04.17.537144},
DOI = {10.1101/2023.04.17.537144},
publisher = {Cold Spring Harbor Laboratory},
Expand Down Expand Up @@ -39,7 +39,7 @@ @article{MonroyKuhn2018
}

@article{Lamnidis2018,
title = {Ancient Fennoscandian genomes reveal origin and spread of Siberian ancestry in Europe},
title = {Ancient {Fennoscandian} genomes reveal origin and spread of {Siberian} ancestry in {Europe}},
volume = {9},
ISSN = {2041-1723},
url = {http://dx.doi.org/10.1038/s41467-018-07483-5},
Expand All @@ -53,7 +53,7 @@ @article{Lamnidis2018
}

@article{Schnoeherr2023,
title = {Haplogrep 3 - an interactive haplogroup classification and analysis platform},
title = {{Haplogrep 3} - an interactive haplogroup classification and analysis platform},
volume = {51},
ISSN = {1362-4962},
url = {http://dx.doi.org/10.1093/nar/gkad284},
Expand All @@ -68,7 +68,7 @@ @article{Schnoeherr2023
}

@article{Knapp2010,
title = {Next Generation Sequencing of Ancient DNA: Requirements, Strategies and Perspectives},
title = {Next Generation Sequencing of Ancient {DNA}: Requirements, Strategies and Perspectives},
volume = {1},
ISSN = {2073-4425},
url = {http://dx.doi.org/10.3390/genes1020227},
Expand All @@ -83,7 +83,7 @@ @article{Knapp2010
}

@article{Fu2015,
title = {An early modern human from Romania with a recent Neanderthal ancestor},
title = {An early modern human from {Romania} with a recent {Neanderthal} ancestor},
volume = {524},
ISSN = {1476-4687},
url = {http://dx.doi.org/10.1038/nature14558},
Expand All @@ -98,7 +98,7 @@ @article{Fu2015
}

@article{Haak2015,
title = {Massive migration from the steppe was a source for Indo-European languages in Europe},
title = {Massive migration from the steppe was a source for {Indo-European} languages in {Europe}},
volume = {522},
ISSN = {1476-4687},
url = {http://dx.doi.org/10.1038/nature14317},
Expand All @@ -113,7 +113,7 @@ @article{Haak2015
}

@article{Mathieson2015,
title = {Genome-wide patterns of selection in 230 ancient Eurasians},
title = {Genome-wide patterns of selection in 230 ancient {Eurasians}},
volume = {528},
ISSN = {1476-4687},
url = {http://dx.doi.org/10.1038/nature16152},
Expand All @@ -128,7 +128,7 @@ @article{Mathieson2015
}

@article{Rohland2022,
title = {Three assays for in-solution enrichment of ancient human DNA at more than a million SNPs},
title = {Three assays for in-solution enrichment of ancient human {DNA} at more than a million {SNPs}},
volume = {32},
ISSN = {1549-5469},
url = {http://dx.doi.org/10.1101/gr.276728.122},
Expand All @@ -143,7 +143,7 @@ @article{Rohland2022
}

@article{Aron2019,
title = {Non-UDG treated double-stranded ancient DNA library preparation for Illumina sequencing v1},
title = {{Non-UDG} treated double-stranded ancient {DNA} library preparation for {Illumina} sequencing v1},
url = {http://dx.doi.org/10.17504/protocols.io.bakricv6},
DOI = {10.17504/protocols.io.bakricv6},
publisher = {ZappyLab, Inc.},
Expand All @@ -153,7 +153,7 @@ @article{Aron2019
}

@article{Aron2020a,
title = {Half-UDG treated double-stranded ancient DNA library preparation for Illumina sequencing v1},
title = {{Half-UDG} treated double-stranded ancient {DNA} library preparation for {Illumina} sequencing v1},
url = {http://dx.doi.org/10.17504/protocols.io.bmh6k39e},
DOI = {10.17504/protocols.io.bmh6k39e},
publisher = {ZappyLab, Inc.},
Expand All @@ -163,7 +163,7 @@ @article{Aron2020a
}

@article{Aron2020b,
title = {Full-UDG treated double-stranded ancient DNA library preparation for Illumina sequencing v1},
title = {Full-{UDG} treated double-stranded ancient {DNA} library preparation for {Illumina} sequencing v1},
url = {http://dx.doi.org/10.17504/protocols.io.bqbpmsmn},
DOI = {10.17504/protocols.io.bqbpmsmn},
publisher = {ZappyLab, Inc.},
Expand All @@ -173,7 +173,7 @@ @article{Aron2020b
}

@article{Gansauge2013,
title = {Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA},
title = {Single-stranded {DNA} library preparation for the sequencing of ancient or damaged DNA},
volume = {8},
ISSN = {1750-2799},
url = {http://dx.doi.org/10.1038/nprot.2013.038},
Expand All @@ -188,7 +188,7 @@ @article{Gansauge2013
}

@article{FellowsYates2021,
title = {Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager},
title = {Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager},
volume = {9},
ISSN = {2167-8359},
url = {http://dx.doi.org/10.7717/peerj.10947},
Expand All @@ -202,7 +202,7 @@ @article{FellowsYates2021
}

@article{Okonechnikov2015,
title = {Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data},
title = {{Qualimap 2}: advanced multi-sample quality control for high-throughput sequencing data},
volume = {32},
ISSN = {1367-4803},
url = {http://dx.doi.org/10.1093/bioinformatics/btv566},
Expand All @@ -217,7 +217,7 @@ @article{Okonechnikov2015
}

@article{Korneliussen2014,
title = {ANGSD: Analysis of Next Generation Sequencing Data},
title = {{ANGSD}: Analysis of Next Generation Sequencing Data},
volume = {15},
ISSN = {1471-2105},
url = {http://dx.doi.org/10.1186/s12859-014-0356-4},
Expand All @@ -231,7 +231,7 @@ @article{Korneliussen2014
}

@article{Nakatsuka2020,
title = {ContamLD: estimation of ancient nuclear DNA contamination using breakdown of linkage disequilibrium},
title = {{ContamLD}: estimation of ancient nuclear DNA contamination using breakdown of linkage disequilibrium},
volume = {21},
ISSN = {1474-760X},
url = {http://dx.doi.org/10.1186/s13059-020-02111-2},
Expand Down Expand Up @@ -261,7 +261,7 @@ @article{Huang2022
}

@article{Burgin2022,
title = {The European Nucleotide Archive in 2022},
title = {The {European Nucleotide Archive} in 2022},
volume = {51},
ISSN = {1362-4962},
url = {http://dx.doi.org/10.1093/nar/gkac1051},
Expand All @@ -276,7 +276,7 @@ @article{Burgin2022
}

@article{Katz2021,
title = {The Sequence Read Archive: a decade more of explosive growth},
title = {The {Sequence Read Archive}: a decade more of explosive growth},
volume = {50},
ISSN = {1362-4962},
url = {http://dx.doi.org/10.1093/nar/gkab1053},
Expand All @@ -302,8 +302,8 @@ @article{Cassidy2015
author = {Lara M. Cassidy and Rui Martiniano and Eileen M. Murphy and
Matthew D. Teasdale and James Mallory and Barrie Hartwell
and Daniel G. Bradley},
title = {Neolithic and Bronze Age migration to Ireland and establishment
of the insular Atlantic genome},
title = {{Neolithic} and {Bronze Age} migration to {Ireland} and establishment
of the insular {Atlantic} genome},
journal = {Proceedings of the National Academy of Sciences}
}

Expand All @@ -319,8 +319,8 @@ @article{Feldman2019
author = {Michal Feldman and Daniel M. Master and Raffaela A. Bianco and
Marta Burri and Philipp W. Stockhammer and Alissa Mittnik and
Adam J. Aja and Choongwon Jeong and Johannes Krause},
title = {Ancient {DNA} sheds light on the genetic origins of early Iron Age
Philistines},
title = {Ancient {DNA} sheds light on the genetic origins of early {Iron Age
Philistines}},
journal = {Science Advances}
}

Expand Down Expand Up @@ -349,7 +349,7 @@ @article{Wickham2019
number = {43},
pages = {1686},
author = {Hadley Wickham and Mara Averick and Jennifer Bryan and Winston Chang and Lucy McGowan and Romain Fran{\c{c}}ois and Garrett Grolemund and Alex Hayes and Lionel Henry and Jim Hester and Max Kuhn and Thomas Pedersen and Evan Miller and Stephan Bache and Kirill M\"{u}ller and Jeroen Ooms and David Robinson and Dana Seidel and Vitalie Spinu and Kohske Takahashi and Davis Vaughan and Claus Wilke and Kara Woo and Hiroaki Yutani},
title = {Welcome to the Tidyverse},
title = {Welcome to the {Tidyverse}},
journal = {Journal of Open Source Software}
}

Expand All @@ -368,7 +368,7 @@ @article{Haslett2008
}

@article{Flegontov2019,
title = {Palaeo-Eskimo genetic ancestry and the peopling of Chukotka and North America},
title = {{Palaeo-Eskimo} genetic ancestry and the peopling of {Chukotka} and {North America}},
volume = {570},
ISSN = {1476-4687},
url = {http://dx.doi.org/10.1038/s41586-019-1251-y},
Expand Down

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