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@coreylowman

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Achievement: Public SponsorAchievement: Pull SharkAchievement: Pair Extraordinaire

Achievements

Achievement: Public SponsorAchievement: Pull SharkAchievement: Pair Extraordinaire

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psmyth94/README.md

👋 Hello, I'm Patrick!

I am currently working on creating a suite of tools to address challenges of applying ML in bioinformatics:

  • biosets - Dataset management and integration in bioinformatics (Released).
  • biofit - Model preprocessing and fitting solutions (Released).
  • biorun - An autotrainer built on top of biosets and biofit (80% complete).
  • bioserve - Tools for deploying, analyzing, and comparing bioinformatics models (50% complete).

Medical Imaging

I am also working on tools that facilitate the use of mamba and CLIP in medical imaging:

  • mamba-clip - A tool for training mamba models in a distributed manner on medical images and associated text data.

📫 Connect with Me

For those interested in collaborating or discussing bioinformatics, machine learning, or AI in healthcare, feel free to reach out to me. I also am looking for people to join Kaggle competitions with, so if you are interested in that, let me know!

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  1. biosets biosets Public

    A bioinformatics extension of 🤗 Datasets library, built for ML applications on biological and omics data, offering easy integration of metadata and low-code data management tools.

    Python 2

  2. biocore biocore Public

    Biocore provides common functions for the bio family of libraries (biosets, biofit, biorun, and bioserve), which addresses various steps in the end-to-end machine learning pipeline and are tailored…

    Python 1

  3. biofit biofit Public

    Biofit is a machine learning library designed for bioinformatics datasets. It provides tools for transforming, extracting, training, and evaluating machine learning models on biomedical data. It al…

    Python 1