Merge pull request #153 from pycroscopy/use_dict3

Use dict3

.gitignore

@@ -220,3 +220,4 @@ notebooks/Imaging/DMReader_EELS_STO.dm3
 notebooks/Imaging/EMDReader_Spectrum_FEI (1).emd
 notebooks/Imaging/NionReader_ImageStack_STO_HAADF.h5
 example_data/p1-3-hr3-1.hf5
+notebooks/Spectroscopy/EDS-Copy1.ipynb

_toc.yml

@@ -9,4 +9,4 @@ chapters:
 - file: notebooks/2_Image_Tools
   sections:
     - file: notebooks/Imaging/Adaptive_Fourier_Filter
-- file: notebooks/3_EELS_Tools
+- file: notebooks/3_Spectroscopy_Tools

installation.md

@@ -8,12 +8,14 @@ such as numpy, h5py etc.
 To simplify the installation process, we recommend the installation of
 [anaconda](https://www.anaconda.com/distribution/) which contains most of the prerequisite packages,
 [conda](https://conda.io/docs/) - a package / environment manager,
-as well as an [interactive development environment](https://en.wikipedia.org/wiki/Integrated_development_environment>`_ - `Spyder <https://www.coursera.org/learn/python-programming-introduction/lecture/ywcuv/introduction-to-the-spyder-ide)
+as well as an [interactive development environment](https://en.wikipedia.org/wiki/Integrated_development_environment) - 
+[Spyder](https://www.coursera.org/learn/python-programming-introduction/lecture/ywcuv/introduction-to-the-spyder-ide)
+
 
 Please note that any other python installation will work too and that pypi will install all missing packages.
 
 Compatibility
-~~~~~~~~~~~~~
+
 * pyTEMlib is compatible with python 3.8 onwards. Please raise an issue if you find a bug.
 * We do not support 32 bit architectures
 * We only support text that is UTF-8 compliant due to restrictions posed by HDF5
@@ -87,4 +89,4 @@ If it does not work try reinstalling the package:
    pip install pyTEMlib
 
 ## Other software
-We recommend [HDF View](https://support.hdfgroup.org/products/java/hdfview/)_ for exploring HDF5 files generated by and used in pyTEMlib.
+We recommend [HDF View](https://support.hdfgroup.org/products/java/hdfview/) for exploring HDF5 files generated by and used in pyTEMlib.

notebooks/3_EELS_Tools.ipynb → notebooks/3_Spectroscopy_Tools.ipynb

@@ -9,7 +9,7 @@
     "<hr style=\"height:1px;border-top:4px solid #FF8200\" />\n",
     "\n",
     "\n",
-    "# EELS Tools\n",
+    "# Spectroscopy Tools\n",
     "\n",
     "\n",
     "part of \n",
@@ -29,10 +29,13 @@
     "\n",
     "Usage of the Image Tools of [pyTEMlib](_pyTEMlib.ipynb)\n",
     "\n",
-    "## [Low-Loss Spectra](EELS/Analyse_Low_Loss.ipynb)\n",
-    "## [Core-Loss Spectra](EELS/Analysis_Core_Loss.ipynb)\n",
-    "## [Low-Loss Spectral Images](Analyse_Low-Loss_Spectral_Images.ipynb)\n",
-    "## [Core-Loss Spectral Images](Analyse_Core-Loss_Spectral_Images.ipynb)\n"
+    "## [Low-Loss Spectra](Spectroscopy/Analyse_Low_Loss.ipynb)\n",
+    "## [Core-Loss Spectra](Spectroscopy/Analysis_Core_Loss.ipynb)\n",
+    "## [Low-Loss Spectral Images](Spectroscopy/Analyse_Low-Loss_Spectral_Images.ipynb)\n",
+    "## [Core-Loss Spectral Images](Spectroscopy/Analyse_Core-Loss_Spectral_Images.ipynb)\n",
+    "\n",
+    "## [EDS Spectra](Spectroscopy/Analyse_EDS_Spectra.ipynb)\n",
+    "## [EDS Spectral Images](Spectroscopy/Analyse_EDS_Spectral_Images.ipynb)\n"
    ]
   },
   {
@@ -57,7 +60,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.10.11"
+   "version": "3.10.12"
   },
   "toc": {
    "base_numbering": "3",